Modularised and tested MATLAB code (ustar_cp)#35

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dorchard wants to merge 506 commits intomainfrom ustar_cp_refactor_main

+5,138,681-87

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Commits on Dec 13, 2024

Commits on Dec 14, 2024

Commits on Dec 16, 2024

Translated matlab reorderAndPreprocessData function to python
isaacaka
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Renamed reorderAndPreprocessData.py to cpd_evaluate_functions.py
isaacaka
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Moved filterInvalidPoints function to cpd_evaluate_functions.py
isaacaka
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added 'logged_data' prefix to test function names which used logged data, changed fnight type conversion from int to double
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Added test for filterInvalidPoints function using synthetic data which tests logical cases of function
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Added test for reorderAndPreprocessData function using synthetic data which tests logical cases of function
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Added test for findStratumIndices function using synthetic data which tests logical cases of function
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Added test for addStatisticsFields function using synthetic data which tests logical cases of function, and python implementation of matlab prctile function
isaacaka
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Refactored python addStatisticsFields implementation into own function
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Changed assert to decrease all indices of the matlab output to match python indexing convention, rather than increasing python indices by 1
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Refactored python findStratumIndices implementation into own function
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Remove findStratumIndices implementation from test function
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Commits on Dec 17, 2024

Commits on Dec 18, 2024

migrated matlab_engine to test_engine
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remove the smop tool here and focus on just the generated code
dorchard
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use smop for auto translation from matlab to python

tztsai
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dorchard
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use ruff to fix some issues

tztsai
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add matlab to python translator

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Fix cmd arguments and output paths of smop

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add pre-commit config

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Add smop TODO and fix some matlab code causing translation errors

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convert smop from py2 to py3

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move libsmop into src/ and fix printing in comments

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Fix single backslash string conversion

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fix array indexing translation

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add converted python files and ruff linting

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Update pre-commit hook

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reformat translated code

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Fix all ruff linting errors

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Fix varargin and implement missing matlab builtin funcs

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reformat

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Merge branch 'unifiedEngine' into 83-pythonise-fceqnannualsine
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tests working
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treat the translated python module as another instance of pytest fixture matlab_engine

tztsai
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fix errors after running pytest on generated python files

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fix some errors and update TODO

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updates conftest

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update matlab_engine fixture and TODO

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fix array concat and refactor libsmop

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fix indexing of non-array types

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Fix function return statement translation

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fix issues: missing funcs in libsmop; input to exist func

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fix importdata in launch.m

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Fix colon indexing

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Fix dataset reading and end object

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fix scalar indexing and class char

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Fix matlabarray wrapping and import failures

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fix precedence issue of &, |

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fix deal, intersect, diff, setting elements of undefined matrix

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fix fcDatevec, fcDoy, size, ones, datenum, datevec

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fix indexing of undefined variable

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fix return values and variable assignments to use matlabarray where appropriate; fix various builtin functions

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Fix solving linear system, indent level in backend.py, and indexing of undefined matrix

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fix matrix element deletion

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fix translation of "eval", fix methods of char, reformat smop

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update

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update jsonencode/jsondecode

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update translation

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add pytest-profiling

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refactor cpdAssignUStarTh20100901 to use exec_ for safer execution and update variable handling for xc2

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refactor function names for consistency and enhance array handling in libsmop.py

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rename matlab_engine fixture to ustar_cp

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refactor setup_Stats and cpdEvaluateUStarTh4Season20100901 to use try-except for Stats initialization; update import statements in smop modules

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Squashed commit of the following:

tztsai
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rename matlab_engine fixture to ustar_cp and update references in tests

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Squashed commit of the following:

tztsai
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translate cpdFmax2Cp3

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refactor: integrate check_struct into various modules and update pytest command

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fix interpolation function and integrate MATLAB type handling in the function decorator

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fix: enhance interp1 function to handle NaN values and invalid inputs

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fix: replace concat with matlabarray and update matlabarray __new__ to handle concat

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reinclude license for the record
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fix: update pytest command to run all unit tests and enhance assertions for consistency

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test updates

j-emberton
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fix: update test functions to use ustar_cp instead of matlab_engine for consistency

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fix pytest arguments

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fix some expected values in test_calculate_p_interpolate

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Merge pull request #64 from Cambridge-ICCS/unifiedEngine
j-emberton
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fix: update type assertions in tests, fix squeeze in libsmop, fix and rename compare_matlab_arrays

tztsai
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update struct impl

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update impl of struct

tztsai
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dorchard
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remove the smop tool here and focus on just the generated code
dorchard
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Merge
dorchard
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fix bad merge
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merge
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more cleanup
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more merging fixups
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fix a comment
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pythonised fcx2colvec
j-emberton
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init file to unpack single-file-modules

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conversion on python data

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make single-function-modules available

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fix python test engine convert/equal

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fix python test engine

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try to improve matlab array comparison

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improve matlab conversion

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generalise comments

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some comments
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unit tests + property tests for fcr2calc
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fix fxc2rowvec
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capture by the np.allclose
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some attempts to optimise our equality procedure
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unmatlab the test fixtures
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fixup multilang test
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Merge pull request #91 from Cambridge-ICCS/90-pythonise-fcx2rowvec
dorchard
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Rebase on ustar_cp_refactor_main
dorchard
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Merge pull request #84 from Cambridge-ICCS/83-pythonise-fceqnannualsine
dorchard
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Merge branch 'ustar_cp_refactor_main' into fcr2Calc
dorchard
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Merge pull request #98 from Cambridge-ICCS/fcr2Calc
dorchard
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Commits on Dec 20, 2024

Commits on Dec 23, 2024

Commits on Jan 2, 2025

tests pass
j-emberton
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Commits on Jan 3, 2025

Commits on Jan 8, 2025

Commits on Jan 9, 2025

Commits on Jan 10, 2025

Commits on Jan 13, 2025

Renamed overlapping file names
isaacaka
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Commits on Jan 14, 2025

Merge pull request #104 from Cambridge-ICCS/rename_files
isaacaka
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Commits on Jan 15, 2025