adding GROMACS 2021.5 with foss/2021b to EESSI pilot 2023.06 #318
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions | |
| name: Tests relying on having EESSI pilot repo mounted | |
| on: [push, pull_request, workflow_dispatch] | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| jobs: | |
| eessi_pilot_repo: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| EESSI_VERSION: | |
| - 2023.06 | |
| EESSI_SOFTWARE_SUBDIR: | |
| - aarch64/generic | |
| - aarch64/neoverse_n1 | |
| - aarch64/neoverse_v1 | |
| - x86_64/amd/zen2 | |
| - x86_64/amd/zen3 | |
| - x86_64/intel/haswell | |
| - x86_64/intel/skylake_avx512 | |
| - x86_64/generic | |
| EASYSTACK_FILE: | |
| - eessi-2023.06-eb-4.7.2-2021a.yml | |
| - eessi-2023.06-eb-4.7.2-2021b.yml | |
| - eessi-2023.06-eb-4.7.2-2022a.yml | |
| - eessi-2023.06-eb-4.7.2-2022b.yml | |
| - eessi-2023.06-eb-4.7.2-system.yml | |
| steps: | |
| - name: Check out software-layer repository | |
| uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # v3.1.0 | |
| - name: Mount EESSI CernVM-FS pilot repository | |
| uses: cvmfs-contrib/github-action-cvmfs@d4641d0d591c9a5c3be23835ced2fb648b44c04b # v3.1 | |
| with: | |
| cvmfs_config_package: https://github.com/EESSI/filesystem-layer/releases/download/latest/cvmfs-config-eessi_latest_all.deb | |
| cvmfs_http_proxy: DIRECT | |
| cvmfs_repositories: pilot.eessi-hpc.org | |
| - name: Test check_missing_installations.sh script | |
| run: | | |
| source /cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}}/init/bash | |
| module load EasyBuild | |
| eb --version | |
| export EESSI_PREFIX=/cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}} | |
| export EESSI_OS_TYPE=linux | |
| export EESSI_SOFTWARE_SUBDIR=${{matrix.EESSI_SOFTWARE_SUBDIR}} | |
| env | grep ^EESSI | sort | |
| echo "just run check_missing_installations.sh (should use eessi-${{matrix.EESSI_VERSION}}.yml)" | |
| ./check_missing_installations.sh ${{matrix.EASYSTACK_FILE}} | |
| - name: Test check_missing_installations.sh with missing package (GCC/8.3.0) | |
| run: | | |
| source /cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}}/init/bash | |
| module load EasyBuild | |
| eb --version | |
| export EESSI_PREFIX=/cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}} | |
| export EESSI_OS_TYPE=linux | |
| export EESSI_SOFTWARE_SUBDIR=${{matrix.EESSI_SOFTWARE_SUBDIR}} | |
| env | grep ^EESSI | sort | |
| echo "modify easystack file by adding a missing package (GCC/8.3.0)" | |
| echo " - GCC-8.3.0:" >> ${{matrix.EASYSTACK_FILE}} | |
| tail -n 5 ${{matrix.EASYSTACK_FILE}} | |
| # note, check_missing_installations.sh exits 1 if a package was | |
| # missing, which is intepreted as false (exit code based, not | |
| # boolean logic), hence when the script exits 0 if no package was | |
| # missing it is interpreted as true, thus the test did not capture | |
| # the missing package | |
| if ./check_missing_installations.sh ${{matrix.EASYSTACK_FILE}}; then | |
| echo "did NOT capture missing package; test FAILED" | |
| exit 1 | |
| else | |
| echo "captured missing package; test PASSED" | |
| exit 0 | |
| fi |