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PR validation, tool config #63

Merged
merged 16 commits into from
Oct 31, 2024
Merged

PR validation, tool config #63

merged 16 commits into from
Oct 31, 2024

Commits on Oct 30, 2024

  1. ci: update workflow files 

    standardise format, change name of tests file
    @alycejenni
    alycejenni committed Oct 30, 2024
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  2. ci: add pull request validation workflow 

    new workflow to check commit format and code style against pre-commit config
    @alycejenni
    alycejenni committed Oct 30, 2024
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  3. ci: update tool config 

    update pre-commit repo versions and switch black to ruff
    @alycejenni
    alycejenni committed Oct 30, 2024
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  4. chore: update tool details in contributing guide

    @alycejenni
    alycejenni committed Oct 30, 2024
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  5. chore: add pull request template

    @alycejenni
    alycejenni committed Oct 30, 2024
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  6. build: remove version from docker compose file 

    version specifier is deprecated
    @alycejenni
    alycejenni committed Oct 30, 2024
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  7. ci: remove python version specifier 

    should be unnecessary to specify python 3 now
    @alycejenni
    alycejenni committed Oct 30, 2024
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  8. build: pin package versions and make cli dependencies optional 

    not pinning sqlalchemy and requests because they're used elsewhere and pinning will probably cause some kind of horrible conflict; everything else has just been pinned to major versions, except spacy which needs to be <3.8 for python 3.8 compatibility (so is just pinned to the latest possible minor version)
    @alycejenni
    alycejenni committed Oct 30, 2024
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  9. fix: make additional cli packages optional

    @alycejenni
    alycejenni committed Oct 30, 2024
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  10. docs: add notes about optional CLI packages

    @alycejenni
    alycejenni committed Oct 30, 2024
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  11. ci: only apply auto-fixes in pre-commit 

    F401 returns linting errors as well as auto-fixes, so this disables the errors and just applies the fixes
    @alycejenni
    alycejenni committed Oct 30, 2024
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  12. style: automatic reformat 

    auto reformat with ruff/docformatter/prettier after config changes
    @alycejenni
    alycejenni committed Oct 30, 2024
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  13. ci: add docformatter args back 

    apparently they don't get pulled from pyproject.toml when using the github action
    @alycejenni
    alycejenni committed Oct 30, 2024
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  14. ci: pull docformatter args from pyproject

    @alycejenni
    alycejenni committed Oct 30, 2024
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  15. ci: add tomli as docformatter dep 

    as recommended by docformatter issue 172
    @alycejenni
    alycejenni committed Oct 30, 2024
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  16. chore: standardise quotes in pre-commit config

    @alycejenni
    alycejenni committed Oct 30, 2024
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