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Updates for NMLv2.3 #96

Merged
merged 92 commits into from
Sep 20, 2023
Merged

Updates for NMLv2.3 #96

merged 92 commits into from
Sep 20, 2023

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pgleeson
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@pgleeson pgleeson commented May 3, 2023

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borismarin and others added 30 commits April 4, 2016 16:12
Temp disable sbml validation
fix(mac): check for `libnrnmech.dylib` on macs
pgleeson and others added 29 commits May 26, 2023 17:04
Feat/99 treat all normal - test in experimental branch
@sanjayankur31 as all the other org.neuroml.x libs have the same version
num, it's best to update all at once or just before release to ensure
they are compatible. jNeuroML is easier to update and can be incremented
when this change for all is fully tested.
This improves the generated graph when using other layouts

Reference: https://graphviz.org/docs/attrs/overlap/
Feat/99 treat all normal - test on experimental
jsonserializer: Treat `all` as a normal subgroup, reserve and use `nrn_all` as list of all segments/sections
feat(graphviz): prevent overlapping in generated graphs
... setting values for the cvode params enables it
Allows length and diameter when parameters in lems abstract cell to be
used for section in hoc
feat(neuron-writer): use `Meta` to allow use of cvode
Update to use of units in mod files
@pgleeson pgleeson merged commit 394dce4 into master Sep 20, 2023
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exported mod always uses cnexp solver
3 participants