Dependancies

[egillax]

Add more dependencies to suggests and put behind ensure_installed commands.

[codecov]

Codecov Report

Attention: Patch coverage is 85.06589% with 204 lines in your changes missing coverage. Please review.

Project coverage is 87.72%. Comparing base (19d59ba) to head (50374a0).
Report is 1 commits behind head on develop.

Files with missing lines	Patch %	Lines
R/HelperFunctions.R	58.49%	44 Missing ⚠️
R/Plotting.R	92.98%	39 Missing ⚠️
R/EvaluationSummary.R	82.53%	33 Missing ⚠️
R/CyclopsModels.R	78.40%	27 Missing ⚠️
R/LearningCurve.R	73.62%	24 Missing ⚠️
R/EvaluatePlp.R	75.00%	15 Missing ⚠️
R/CalibrationSummary.R	92.94%	6 Missing ⚠️
R/SklearnClassifierSettings.R	85.71%	6 Missing ⚠️
R/ViewShinyPlp.R	0.00%	5 Missing ⚠️
R/FeatureEngineering.R	86.66%	2 Missing ⚠️
... and 2 more

Additional details and impacted files

@@             Coverage Diff             @@
##           develop     #518      +/-   ##
===========================================
+ Coverage    86.92%   87.72%   +0.79%     
===========================================
  Files           50       49       -1     
  Lines        10477    10564      +87     
===========================================
+ Hits          9107     9267     +160     
+ Misses        1370     1297      -73     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

[egillax]

I ended up removing the following dependencies from suggests as well:

AUC: Doesn't seem to be used anymore
devtools: Only used in package maintenance to check spelling, removed that check. Can run it manually if required.
markdown: This is for markdown v1, which I believe rmarkdown has superseded.
plyr: Is not used directly, but is a dependency of pROC
pool: Not directly used but indirectly through DatabaseConnector

I did verify all tests passed with out these.

[egillax]

These changes affect how many packages are installed (pkgndep::pkgndep):

develop:

- 93 packages are required for installing.
- 236 packages are required if installing packages listed in all fields in DESCRIPTION.

This PR:

- 72 packages are required for installing.
- 216 packages are required if installing packages listed in all fields in DESCRIPTION.