-
Notifications
You must be signed in to change notification settings - Fork 170
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
MDACA 3.0.1 #2378
Open
mdaca
wants to merge
155
commits into
OHDSI:mdaca-3.0.1
Choose a base branch
from
mdaca:mdaca-3.0.1
base: mdaca-3.0.1
Could not load branches
Branch not found: {{ refName }}
Loading
Could not load tags
Nothing to show
Loading
Are you sure you want to change the base?
Some commits from the old base branch may be removed from the timeline,
and old review comments may become outdated.
Open
MDACA 3.0.1 #2378
Changes from 1 commit
Commits
Show all changes
155 commits
Select commit
Hold shift + click to select a range
3f9e90c
Start version 2.15.0
chrisknoll f258186
Permission Performance Optimizations (#2341)
chrisknoll d90d653
Add Databricks profile (#2339)
anthonysena 31b3332
MDACA Spring Boot 3 migration
38d62cb
MDACA Spring Boot 3 migration
ca031db
Updated for MDACA Migration to SB 3
spinsysmpeterson 4053f4f
Updates for MDACA Migration to SB 3
spinsysmpeterson 31a9da2
MDACA Spring boot 3 migration
7f04dd7
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI i…
6faf8a8
changes for MDACA Migration to SB 3
spinsysmpeterson 451f673
MDACA Spring boot 3 migration
c6ed67e
updates for MDACA migration to SB 3
spinsysmpeterson 29f72e5
updates for MDACA Migration to SB 3
spinsysmpeterson 6bb8336
changes for MDACA Migration to SB 3
spinsysmpeterson 5786b7c
MDACA Spring Boot 3 migration, deprecated @TypeDefs & @TypeDef replaced
071015c
updates for MDACA migration to SB 3
spinsysmpeterson 8c6b89b
MDACA Spring Boot 3 migration comment out jerey classes that need ref…
4fd9f03
MDACA Spring Boot 3 migration
c65bd97
Updates for MDACA Migration for SB 3
spinsysmpeterson a6a66d5
MDACA Spring Boot 3 migration
10cae96
MDACA Spring Boot 3 migration
bbbe90c
MDACA Spring Boot 3 migration
73a1e81
MDACA Spring Boot 3 migration
00039d9
MDACA Spring Boot 3 migration
b113d9a
MDACA Spring Boot 3 migration
915d697
Updates for MDACA Migration to SB 3
spinsysmpeterson 7776ea0
MDACA Spring Boot 3 migration
8477431
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI.git
spinsysmpeterson 70800ac
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI.git
spinsysmpeterson 7e1b3cc
fix merge fix
spinsysmpeterson 64e4be3
updates for MDACA Migration to SB3
spinsysmpeterson 14b1111
MDACA Spring Boot 3 migration
66d7b03
MDACA Spring Boot 3 migration
54b69ee
increased log4j version for MDACA Migration to SB 3
spinsysmpeterson 0a49a04
Updates for MDACA Migration to SB 3
spinsysmpeterson 6a235a2
MDACA Spring Boot 3 migration
abc2a51
MDACA Spring Boot 3 migration
2e644c5
MDACA Spring Boot 3 migration compilation issue
90da66b
Updated config for MDACA Migration to SB 3
spinsysmpeterson f76526f
MDACA Spring Boot 3.2.5 migration, other recipes
ebf168a
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI i…
f8519d0
MDACA Spring Boot 325 migration pom cleanup
5d2e4aa
MDACA Spring Boot 325 migration pom update security versions
26cb4f9
MDACA Spring Boot 3 migration
4324275
changes for MDACA Migration to SB 3
spinsysmpeterson 450ce93
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI.g…
spinsysmpeterson cbd0980
updates for MDACA Migration to SB 3
spinsysmpeterson 8b36d13
updates for MDACA Migration to SB 3
spinsysmpeterson 678f040
docker workaround to upload to harbor
404676a
Updated paging for MDACA Upgrade to SB 3
spinsysmpeterson 610fa0c
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI i…
spinsysmpeterson add6419
security scan 2 dependency chnages
40fc510
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI i…
3ec1e03
additional changes for MDACA migration to SB 3, shiro and pac4j changes
spinsysmpeterson 2935355
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI.git
spinsysmpeterson ceae636
Fixed permissionIdx that was removed during upgrade
spinsysmpeterson db6812a
Added exlusion to Buji for Pac4j javaee, got it working with tomcat
spinsysmpeterson c221dc6
cleanup pre-pull request
spinsysmpeterson 32ad9ad
Updated dockerfile & pom for MDACA containers
5353882
Updated job execution SQL for updated batch params table fields
44b6daa
Fixed Redshift dependency in pom
spinsysmpeterson a6699d1
patched pom for grype secuiryt scan
5bbe3da
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI i…
8e02bc3
Updated dockerfile & adding WebAPI.war
683a07a
Track .war files with Git LFS
97bc021
removed war
b00cd25
Delete .github/workflows/release.yaml
stevensrtw 7160afc
Update ci.yaml
stevensrtw 9109a1b
Update pom.xml
stevensrtw ba96db9
Create settings.xml
stevensrtw 8b9ca7e
Create Dockerfile-mvn-no-local
stevensrtw e2ba15c
Update Dockerfile-mvn-no-local
stevensrtw 6eb654d
Update Dockerfile-mvn-no-local
stevensrtw 3a082d7
Update Dockerfile-mvn-no-local
stevensrtw 2526f3b
Update Dockerfile-mvn-no-local
stevensrtw ac67253
Update Dockerfile-mvn-no-local
stevensrtw 7801312
Update ci.yaml
stevensrtw a174948
Update ci.yaml
stevensrtw 74363d9
Update ci.yaml
stevensrtw 5a8f838
Update ci.yaml
stevensrtw 5ee0140
Update ci.yaml
stevensrtw c5c0d36
Update Dockerfile-mvn-no-local
stevensrtw b936eca
Update Dockerfile-mvn-no-local
stevensrtw d21239b
Update Dockerfile-mvn-no-local
stevensrtw 843b8c3
Update Dockerfile-mvn-no-local
stevensrtw 8c4c6c4
Update Dockerfile-mvn-no-local
stevensrtw 0f73208
Update Dockerfile-mvn-no-local
stevensrtw fade004
Update Dockerfile-mvn-no-local
stevensrtw 4ce36a6
Update Dockerfile-mvn-no-local
stevensrtw b302323
Update Dockerfile-mvn-no-local
stevensrtw fbfdf5b
Update Dockerfile-mvn-no-local
stevensrtw 8193b05
Update ci.yaml
stevensrtw a2b6ba8
Update ci.yaml
stevensrtw bc153d0
Update ci.yaml
stevensrtw 4a81413
Update Dockerfile-mvn-no-local
stevensrtw d69f190
Update Dockerfile-mvn-no-local
stevensrtw 846f213
Update ci.yaml
stevensrtw 50227d9
Update pom.xml
stevensrtw 13c2b43
Update Dockerfile-mvn-no-local
stevensrtw 2b26c2d
Update Dockerfile-mvn-no-local
stevensrtw 649be12
Update Dockerfile-mvn-no-local
stevensrtw 22cc5ff
Update Dockerfile-mvn-no-local
stevensrtw 509bb69
Update Dockerfile-mvn-no-local
stevensrtw 043e7f0
Update Dockerfile-mvn-no-local
stevensrtw 6b2c19f
Update Dockerfile-mvn-no-local
stevensrtw 582fcf8
updated telemetry version for security scan
f237fcd
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI i…
6ef5daf
Update Dockerfile-mvn-no-local
stevensrtw 7a8adbe
Update ci.yaml
stevensrtw a033b19
Update ci.yaml
stevensrtw 3bee9c9
Update ci.yaml
stevensrtw 7b007f2
Update ci.yaml
stevensrtw 7b9cfa6
Update ci.yaml
stevensrtw c322b94
Update ci.yaml
stevensrtw e451e2b
Update Dockerfile-mvn-no-local
stevensrtw 325e65e
Update ci.yaml
stevensrtw 44994b8
Update Dockerfile-mvn-no-local
stevensrtw 77afd2a
security scan version fix
884bba4
Update ci.yaml
stevensrtw 684aa35
updated xmlsec dependency version for security scan. cleaned up pom o…
06a9ab1
update dependency for security scan
4bfeec1
remove bcprov 1.63 from cas-core dependency
013e6a5
Update ci.yaml
stevensrtw df210b4
Update ci.yaml
stevensrtw eeeb23b
add local mvn dockerfile
a84016e
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI i…
f0de900
refactored commons after removing older spring batch admin mgr
9bbf929
Completed refactoring of jobs to Spring Batch 5, reverted changes to …
spinsysmpeterson 9423548
Update ci.yaml
stevensrtw 2af622e
fixed pom security setting
spinsysmpeterson 4712777
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI i…
spinsysmpeterson a1fc308
Fixed transactionManager on stepBuilders for tasklet, addresses cohor…
spinsysmpeterson e39de7c
updated DynamicEntityGraph paths
spinsysmpeterson 016943b
Added missing transactionManagers
spinsysmpeterson 9e71e01
Added missing transactionManagers
spinsysmpeterson 7739165
fixes for FeAnalysisEntity to properly map design column, fixed enum …
spinsysmpeterson 7cf9dcc
add transactionmanager, and jobrepository to fix delete cohort errors
7ca12af
added PlatformTransactionManager for previous fix not in previous commit
5f80745
updated tomcat version for cve-2024-56337
e3967ac
updated spring dependencies for security scans: CVE-2024-38816, CVE-2…
a6ca5db
updated spring dependencies for security scans: CVE-2024-47554
3a236dc
update dependencies for secuity scan: CVE-2024-47554
c360153
update for security scan: CVE-2022-24615 and CVE-2023-22899
d4fa9f2
update for security scan: CVE-2024-38829
9550aa5
update for security scan: CVE-2024-47554
c6d87b5
update for security scan: CVE-2024-47554
1435b0f
update for security scan: CVE-2024-47554
0665748
update for security scan: CVE-2024-47554
0defd00
update velocity-engine-core for security scan: CVE-2024-47554
cf58753
update velocity-engine-core for new CVEs
b09a84d
Updated tag from 3.20.3 to 3.20.6 for alpine patch and updated ci.yml…
stevensrtw cdbf5f3
Updated tag 3.0.2.2 to 3.0.2.3
stevensrtw 29745c7
changed logging from debug to error
485f744
Merge branch 'mdaca-3.0.1' of https://github.com/mdaca/OHDSI-WebAPI i…
b25e7b5
update dependency version for security scan: cve-2024-57699
File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I don't think we should haev this here. We use Flyway to manage db migrations, and it's unclear how hibernate DDL validation will interact with this. I don't htink we should enable it.