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PacBio

README.md

👋 to PacBio's GitHub space

Are you looking for great tools to analyze your HiFi data?

How about complete workflows for your HiFi data?

Help pages for tools that are running on our long-read platform?

This list is work in progress, check out our repositories for more greatness!

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  1. pbbioconda pbbioconda Public

    PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

    249 44

  2. ccs ccs Public

    CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

    115 30

  3. pbmm2 pbmm2 Public

    A minimap2 frontend for PacBio native data formats

    Perl 170 27

  4. pb-metagenomics-tools pb-metagenomics-tools Public

    Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

    HTML 168 34

  5. trgt trgt Public

    Tandem repeat genotyping and visualization from PacBio HiFi data

    Rust 103 7

  6. hifihla hifihla Public

    An HLA star-calling tool for PacBio HiFi data types

    20 2

Repositories

Showing 10 of 86 repositories
  • HiFi-somatic-WDL Public

    Tumor-normal variant calling workflow using HiFi reads

    PacificBiosciences/HiFi-somatic-WDL’s past year of commit activity
    WDL 12 BSD-3-Clause-Clear 6 0 1 Updated Oct 1, 2024
  • HiPhase Public

    Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

    PacificBiosciences/HiPhase’s past year of commit activity
    Rust 67 4 0 0 Updated Sep 25, 2024
  • pb-metagenomics-tools Public

    Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

    PacificBiosciences/pb-metagenomics-tools’s past year of commit activity
    HTML 168 BSD-3-Clause-Clear 34 1 0 Updated Sep 23, 2024
  • IsoSeq Public

    Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

    PacificBiosciences/IsoSeq’s past year of commit activity
    190 BSD-3-Clause-Clear 61 0 1 Updated Sep 17, 2024
  • trgt Public

    Tandem repeat genotyping and visualization from PacBio HiFi data

    PacificBiosciences/trgt’s past year of commit activity
    Rust 103 7 19 0 Updated Sep 17, 2024
  • sawfish Public

    Structural variant discovery and genotyping from mapped PacBio HiFi data

    PacificBiosciences/sawfish’s past year of commit activity
    Rust 23 1 1 0 Updated Sep 13, 2024
  • pb-StarPhase Public

    A phase-aware pharmacogenomic diplotyper for PacBio datasets

    PacificBiosciences/pb-StarPhase’s past year of commit activity
    10 BSD-3-Clause-Clear 1 0 0 Updated Sep 10, 2024
  • HiFi-human-WGS-WDL Public
    PacificBiosciences/HiFi-human-WGS-WDL’s past year of commit activity
    WDL 50 BSD-3-Clause-Clear 26 3 1 Updated Sep 5, 2024
  • wdl-common Public
    PacificBiosciences/wdl-common’s past year of commit activity
    WDL 4 BSD-3-Clause-Clear 5 0 2 Updated Sep 4, 2024
  • wdl-dockerfiles Public
    PacificBiosciences/wdl-dockerfiles’s past year of commit activity
    Python 3 BSD-3-Clause-Clear 0 0 4 Updated Sep 4, 2024
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