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1. dadi_pipeline dadi_pipeline Public

   An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting goodness of fit tests, and plotting.

   Python 63 30

2. SuperCRUNCH SuperCRUNCH Public

   A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local sequence data.

   Python 42 9

3. MonoPhylo MonoPhylo Public

   A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.

   Python 9 2

4. TaxonomyAlign TaxonomyAlign Public

   Taxonomy-guided multiple sequence alignment for difficult genes, including 12S and 16S mitochondrial rRNA.

   Python 4

5. Pandas-for-Population-Structure-Barplots Pandas-for-Population-Structure-Barplots Public

   A jupyter notebook tutorial for making high-quality barplot figures from population structure analyses (Admixture, Structure) with Python & Pandas.

   HTML 12 3

6. SSDi-Calculator SSDi-Calculator Public

   A Python tool for calculating sexual size dimorphism indices from body size data. Performs permutation tests to determine statistically significant sexual dimorphism.

   Python 2