Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Make ca2+ example run and add submit scripts for HPC cluster #6

Merged
merged 28 commits into from
Jan 3, 2024
Merged

Make ca2+ example run and add submit scripts for HPC cluster #6

Show file tree
Hide file tree
Changes from 8 commits
Commits
Show all changes
28 commits
Select commit Hold shift + click to select a range
af55724
Make example run
finsberg Oct 30, 2023
3ec39fb
Make example run
finsberg Oct 30, 2023
cb0632b
Add requirements
finsberg Oct 30, 2023
6004216
Add requirements and submit scripts
finsberg Oct 30, 2023
47e19fd
Make it possible to set paths via environment variables
finsberg Oct 30, 2023
8e94677
Merge branch 'finsberg/fix-ca2+-example' into finsberg/submit-scripts
finsberg Oct 30, 2023
ae1a7d9
Merge pull request #7 from RangamaniLabUCSD/finsberg/submit-scripts
finsberg Oct 30, 2023
9d17aff
Attempt to fix notebook formatting
finsberg Oct 30, 2023
841e960
Don't write mesh on HPC cluster
finsberg Oct 31, 2023
7320d91
Save both figures to result folder
finsberg Oct 31, 2023
84b0fa8
Fix typo
finsberg Oct 31, 2023
44d07e1
Add HPC flag to submit script
finsberg Oct 31, 2023
69ad36c
Dump config to results folder
finsberg Oct 31, 2023
7ff1288
clean up dendritic_spine model file and uncomment code for NMDAR loca…
emmetfrancis Nov 1, 2023
9f08fe8
Remove results files
emmetfrancis Nov 1, 2023
07fba63
Use argparse instead to pass arguments and add preprocessing script f…
finsberg Nov 2, 2023
d4078ee
Add timers
finsberg Nov 9, 2023
c3064e4
Add changes from emmet
finsberg Dec 17, 2023
73837b1
Merge remote-tracking branch 'origin/emmetfrancis/dev' into finsberg/…
finsberg Dec 17, 2023
6aaee57
Add back argument parser
finsberg Dec 17, 2023
89755d1
Add scripts for submitting to ex3
finsberg Dec 19, 2023
2f9df82
Dump info about run to config file
finsberg Dec 19, 2023
cfba4b5
Refine mesh before submitting to cluster
finsberg Dec 19, 2023
25e8543
Merge branch 'emmetfrancis/dev' into finsberg/fix-ca2+-example
finsberg Dec 19, 2023
622cb9f
Make compatible with python3.7 and run on finer timestep
finsberg Dec 20, 2023
a38c65f
Add test for mass conservation
finsberg Dec 23, 2023
489a677
Add script for analyzing the results from the dendritic spine example
finsberg Jan 3, 2024
3fa424d
Merge remote-tracking branch 'origin/main' into finsberg/fix-ca2+-exa…
finsberg Jan 3, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Loading