Remove spezi_data_pipeline
source code and tests
from repo
#10
Workflow file for this run
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# | |
# This source file is part of the Stanford Spezi open-source project | |
# | |
# SPDX-FileCopyrightText: 2024 Stanford University and the project authors (see CONTRIBUTORS.md) | |
# | |
# SPDX-License-Identifier: MIT | |
# | |
name: Build and Test | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
workflow_dispatch: | |
workflow_call: | |
jobs: | |
build_and_test_notebook: | |
name: Build and Test Notebook | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
- name: Setup NodeJS | |
uses: actions/setup-node@v3 | |
- name: Setup Java | |
uses: actions/setup-java@v3 | |
with: | |
distribution: "microsoft" | |
java-version: "17" | |
- name: Update apt-get | |
run: sudo apt-get update | |
- name: Setup LaTex | |
run: | | |
sudo apt-get install -y --fix-missing pandoc texlive-xetex texlive-fonts-recommended texlive-plain-generic | |
- name: Cache Firebase Emulators | |
uses: actions/cache@v3 | |
with: | |
path: ~/.cache/firebase/emulators | |
key: ${{ runner.os }}-${{ runner.arch }}-firebase-emulators-${{ hashFiles('~/.cache/firebase/emulators/**') }} | |
- name: Install Firebase CLI Tools | |
run: npm install -g firebase-tools | |
- name: Install Infrastructure | |
run: | | |
python -m pip install --upgrade pip | |
pip install jupyterlab | |
- name: Install spezi-data-pipeline package | |
run: | | |
python -m pip install --upgrade pip | |
pip install -r requirements.txt | |
- name: Set Firestore Emulator Environment Variable | |
run: | | |
echo "FIRESTORE_EMULATOR_HOST=localhost:8080" >> $GITHUB_ENV | |
echo "GCLOUD_PROJECT=spezidatapipelinetemplate" >> $GITHUB_ENV | |
- name: Run Firebase Emulator & Execute Notebook | |
run: | | |
firebase emulators:exec --import=./sample_data "jupyter nbconvert --to pdf --execute SpeziDataPipelineTemplate.ipynb" | |
env: | |
CI: true | |
- uses: actions/upload-artifact@v4 | |
with: | |
name: SpeziDataPipelineTemplate.pdf | |
path: SpeziDataPipelineTemplate.pdf |