Fix flavours pipeline #79
Workflow file for this run
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| name: Code Quality | |
| # Workflow to check if project meets the code quality standards of the Biosustain group | |
| on: | |
| workflow_call: | |
| inputs: | |
| JSON_ENV: | |
| description: | | |
| JSON string with environment variables to pass to the mega-linter. | |
| To pass all environment variables, use toJson(env) | |
| required: false | |
| default: "{}" # Empty JSON object | |
| type: string | |
| workflow_dispatch: | |
| inputs: | |
| JSON_ENV: | |
| description: | | |
| JSON string with environment variables to pass to the mega-linter. | |
| required: false | |
| default: "{}" # Empty JSON object | |
| type: string | |
| # Trigger the workflow also on push or pull request in this repository | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| # Give the default GITHUB_TOKEN write permission to commit and push, comment | |
| # issues & post new PR; remove the ones you do not need | |
| permissions: | |
| security-events: write | |
| actions: read # Needed to run codeql/upload-sarif@v3 | |
| contents: write | |
| issues: write | |
| pull-requests: write | |
| statuses: write | |
| concurrency: | |
| group: ${{ github.ref }}-${{ github.workflow }} | |
| cancel-in-progress: true | |
| jobs: | |
| check-code-quality: | |
| name: Run MegaLinter to check code quality | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Load configuration | |
| uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633 # v4.1.2 | |
| with: | |
| repository: biosustain/code-quality-check | |
| path: config | |
| - name: Checkout Code | |
| uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633 # v4.1.2 | |
| with: | |
| token: ${{ secrets.PAT || secrets.GITHUB_TOKEN }} | |
| path: code | |
| fetch-depth: 0 | |
| - name: Set config path environment variables | |
| env: | |
| JSON_ENV: ${{ inputs.JSON_ENV }} | |
| run: | | |
| # Set the environment variables for the MegaLinter | |
| echo "$JSON_ENV" | jq -r "to_entries|map(\"\(.key)=\(.value|tostring)\")|.[]" | tee -a "$GITHUB_ENV" | |
| # Extend the configuration file if it exists, else use default | |
| if [ -f code/.mega-linter.yml ]; then | |
| # This cannot be set is there is no .mega-linter.yml in project | |
| echo 'EXTENDS=../config/.mega-linter.yml' | tee -a "$GITHUB_ENV" | |
| else | |
| echo 'MEGALINTER_CONFIG=../config/.mega-linter.yml' | tee -a "$GITHUB_ENV" | |
| fi | |
| # MegaLinter | |
| - name: MegaLinter | |
| uses: oxsecurity/[email protected] | |
| id: ml | |
| env: | |
| # All available variables are described in documentation | |
| # https://megalinter.io/configuration/ | |
| # Define the reporters used in this action (not overrideable) | |
| SARIF_REPORTER: true | |
| MARKDOWN_SUMMARY_REPORTER: true | |
| GITHUB_WORKSPACE: ${{ github.workspace }}/code | |
| DEFAULT_WORKSPACE: ${{ github.workspace }}/code | |
| # Validates all source when push on main, else just the git diff with | |
| # main. | |
| VALIDATE_ALL_CODEBASE: > | |
| ${{ | |
| github.event_name == 'push' && | |
| contains(fromJSON('["refs/heads/main", "refs/heads/master"]'), github.ref) | |
| }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| # Upload MegaLinter artifacts | |
| - name: Archive production artifacts | |
| uses: actions/upload-artifact@5d5d22a31266ced268874388b861e4b58bb5c2f3 # v4.3.1 | |
| if: always() && (steps.ml.outcome == 'failure') # Only upload if MegaLinter failed | |
| with: | |
| name: MegaLinter reports | |
| path: | | |
| megalinter-reports | |
| mega-linter.log | |
| - name: Upload MegaLinter scan results to GitHub Security tab | |
| continue-on-error: true # This might error if github advanced security is not enabled | |
| if: always() && (steps.ml.outcome == 'failure') # Only upload if MegaLinter failed | |
| uses: github/codeql-action/upload-sarif@c7f9125735019aa87cfc361530512d50ea439c71 # v3.25.1 | |
| with: | |
| sarif_file: "megalinter-reports/megalinter-report.sarif" | |
| - name: Show report in job summary | |
| if: always() && (steps.ml.outcome == 'success' || steps.ml.outcome == 'failure') # Only show if MegaLinter ran | |
| run: tee "$GITHUB_STEP_SUMMARY" < megalinter-reports/megalinter-report.md |