0.5.5

What's Changed

• build: bump gene-normalizer version to 0.1.36 by @korikuzma in #421
• fix: catch errors for (##)#dup and #(##)dup HGVS exprs (#419) by @korikuzma in #422
• docs: update query descriptions for /to_vrs and /normalize by @korikuzma in #423
• docs: document branch / version tracking (#403) by @korikuzma in #424

Full Changelog: 0.5.4...0.5.5

0.5.4

What's Changed

• refactor: Allow option to use existing gene-normalizer instance by @korikuzma in #396
• refactor!: initial cleanup of tokenizers by @korikuzma in #395
• feat!: Apply VRS 1.3 Changes by @korikuzma in #409

Full Changelog: 0.5.3...0.5.4

0.7.0-dev7

What's Changed

• fix: update cool-seq-tool to 0.1.13 by @korikuzma in #410

Full Changelog: 0.7.0-dev6...0.7.0-dev7

0.7.0-dev6

What's Changed

• Issue 394 metaschema by @korikuzma in #402

Full Changelog: 0.7.0-dev5...0.7.0-dev6

0.7.0-dev5

What's Changed

• refactor: Allow option to use existing gene-normalizer instance (staging) by @korikuzma in #397
• refactor!: initial cleanup of tokenizers (metaschema-update) by @korikuzma in #399

Full Changelog: 0.7.0-dev4...0.7.0-dev5

0.7.0-dev4

What's Changed

• ci: resolve actions version warnings by @jsstevenson in #335
• build: update gene-normalizer version to v0.2.6 (staging) by @korikuzma in #337
• build!: replace uta tools with cool seq tool (dev) by @korikuzma in #341
• change: relative_copy_class uses EFO IDs by @korikuzma in #346
• build: update dependency versions by @korikuzma in #352
• perf: gnomad_vcf_to_protein replace call to uta db with df lookup (staging) by @korikuzma in #353
• build: update dependencies (staging) by @korikuzma in #376
• fix: TypeError in _is_grch38_assembly (stgaging) by @korikuzma in #375
• cicd: revert dev termination time back to 12 hours by @korikuzma in #377
• fix: remove duplicate warnings in gnomad_vcf_to_protein (staging) by @korikuzma in #382
• refactor: replace AminoAcidCache with bioutils (staging) by @korikuzma in #381
• fix: add support for ambiguous N IUPAC code for cDNA + genomic (staging) by @korikuzma in #384
• refactor!: update cool-seq-tool (staging) by @korikuzma in #392
• feat: add support for amino acids after del (staging) by @korikuzma in #393

Full Changelog: v0.7.dev0...0.7.0-dev4

0.5.3

What's Changed

• refactor: replace AminoAcidCache with bioutils by @korikuzma in #366
• feat: add support for amplification queries (main) by @korikuzma in #367
• build(deps): bump starlette from 0.22.0 to 0.25.0 by @dependabot in #371
• build(deps): bump ipython from 8.9.0 to 8.10.0 by @dependabot in #370
• build: update dependencies by @korikuzma in #373
• fix: TypeError in _is_grch38_assembly by @korikuzma in #374
• feat: expose cool-seq-tool alignment mapper endpoints by @korikuzma in #380
• fix: add support for ambiguous N IUPAC code for cDNA + genomic by @korikuzma in #385
• feat: add support for amino acids after del by @korikuzma in #386
• refactor!: update cool-seq-tool by @korikuzma in #391

Full Changelog: v0.5.2...0.5.3

v0.5.2

What's Changed

• build!: replace uta tools with cool seq tool by @korikuzma in #340
• perf: gnomad vcf -> p will try mane transcript result first by @korikuzma in #343
• perf: gnomad_vcf_to_protein replace call to uta db with df lookup (main) by @korikuzma in #350
• build: unpin ga4gh.vrs + bump gene-normalizer (main) by @korikuzma in #351
• change: version by @korikuzma in #354
• fix: remove duplicate warnings in gnomad_vcf_to_protein by @korikuzma in #356

Full Changelog: v0.5.1...v0.5.2

v0.5.1

What's Changed

• Bump lxml from 4.9.0 to 4.9.1 by @dependabot in #305
• BREAKING CHANGE: refactor: simplify QueryHandler class by @korikuzma in #304
• docs: update readme for setting up backend services by @korikuzma in #306
• refactor!: main query methods return pydantic service class response by @korikuzma in #308
• refactor: update route descriptions by @korikuzma in #312
• refactor: service response by @korikuzma in #316
• build: update gene-normalizer to v.1.30 by @korikuzma in #338

Full Changelog: v0.4.0a7...v0.5.1

v0.7.dev0

What's Changed

• feat: add support for amplification queries by @korikuzma in #333

Full Changelog: v0.6.3...v0.7.dev0