v0.2.20: Merge pull request #243 from cancervariants/staging

• Adds dockerfile
• Set variation descriptor's label to input query
• Replace pandas.read_sql in uta data source
• Add canonical spdi to categorical variation endpoint

v0.2.19: Merge pull request #238 from cancervariants/staging

• Remove normalized MANE Transcript response from toVRS

v0.2.18: Merge pull request #233 from cancervariants/staging

• Removes unused hgvs.parser from validator + mane transcript
• Fix bug in deletions state

v0.2.17: Merge pull request #227 from cancervariants/issue-226

• Add url to openapi contact info
• Always enable Try it out param in FastAPI
• Add citation
• Update dependencies
  • sqlalchemy
  • psycopg2-binary (dev)

VICC Variation Normalization

The January 2022 pre-release of the VICC variation normalization software, live instance available online at http://normalize.cancervariants.org/variation

v0.2.15

• Catches ValueError when creating a sequence location whose namespace can't be inferred

v0.2.14: Merge pull request #206 from cancervariants/staging

• Add translate_identifier endpoint
• Fix bug in UTA for ordering alt_ac by desc
• Add support for basic gnomad VCF substitution, insertion, and deletion
• Add support for gnomad VCF -> MANE p

v0.2.13: Merge pull request #194 from cancervariants/staging

• Add HGVS Del Dup Mode in normalize endpoint
  • Currently only supports genomic deletions and duplications
• Update to VRS 1.2.0 models
• Add _id in all VRS models
• Fix position bug in MANE transcript

v0.2.12: Merge pull request #181 from cancervariants/staging

• Only get MANE Transcript if gene is provided in genomic queries
• SEQREPO_DATA_PATH uses /usr/local/share/seqrepo/latest path
• Use latest gene-normalizer

v0.2.11: Merge pull request #148 from cancervariants/issue-140

• Add support for representing HGVS genomic uncertain deletions as VRS Copy Number variation