Releases: cancervariants/variation-normalization
Releases · cancervariants/variation-normalization
v0.2.10
v0.2.9: Merge pull request #138 from cancervariants/issue-114
- Query seqrepo the efficient way rather than getting entire sequence and then indexing
- Commented out tokenizers that we are not currently using
- Use gene-normalizer to get
GeneSymbolTokens
- Caching this data in both tokenizer and normalize
- Created a table in UTA called
genomic
to contain genomic accession data (accession, start/end pos, gene). I created a table since we are unable to index views.
v0.2.8
v0.2.6: Merge pull request #134 from cancervariants/issue-132
- normalize return variation descriptor with text object if query can't be normalized
- toVRS returns a list of variations (Allele or Text)
v0.2.5: Merge pull request #123 from cancervariants/variation
- variant --> variation
- Fix validation checks on c. coordinates (previously did not include cds start)
- implement mane transcript instead of using Clin Gen Allele Registry API
- Add mane transcripts for silent mutations
- Get gene from genomic accession
0.2.4: Merge pull request #112 from cancervariants/issue-106
- Simple insertions for p./c./g. references
v0.2.3: Merge pull request #109 from cancervariants/error-fixes
- Fix TypeError when getting transcripts from gene
- Fix ValueError when getting aliases from SeqRepoDataProxy
v0.2.2: Merge pull request #105 from cancervariants/issue-103
- Add support for protein, transcript, and genomic deletions
v0.2.1: Merge pull request #104 from cancervariants/gene-normalizer
- Instantiate gene-normalizer once in init
v0.2.0: Merge pull request #104 from cancervariants/gene-normalizer
- Support protein delins