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Releases: cancervariants/variation-normalization

v0.2.10

27 Aug 12:37
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v0.2.10 Pre-release
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  • Fix download for refseq_gene_symbols.txt

v0.2.9: Merge pull request #138 from cancervariants/issue-114

24 Aug 19:52
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  • Query seqrepo the efficient way rather than getting entire sequence and then indexing
  • Commented out tokenizers that we are not currently using
  • Use gene-normalizer to get GeneSymbolTokens
    • Caching this data in both tokenizer and normalize
  • Created a table in UTA called genomic to contain genomic accession data (accession, start/end pos, gene). I created a table since we are unable to index views.

v0.2.8

13 Aug 17:56
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v0.2.8 Pre-release
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  • Update to latest version of VRSATILE
    • ref_allele_seq --> vrs_ref_allele_seq
  • Use classes from gene-normalizer rather than implementing again
  • Adding validators to pydantic classes

v0.2.6: Merge pull request #134 from cancervariants/issue-132

12 Aug 19:42
79f9d89
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  • normalize return variation descriptor with text object if query can't be normalized
  • toVRS returns a list of variations (Allele or Text)

v0.2.5: Merge pull request #123 from cancervariants/variation

04 Aug 19:34
ddbd165
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  • variant --> variation
  • Fix validation checks on c. coordinates (previously did not include cds start)
  • implement mane transcript instead of using Clin Gen Allele Registry API
  • Add mane transcripts for silent mutations
  • Get gene from genomic accession

0.2.4: Merge pull request #112 from cancervariants/issue-106

26 May 16:43
da03a18
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  • Simple insertions for p./c./g. references

v0.2.3: Merge pull request #109 from cancervariants/error-fixes

13 May 17:06
c2dda37
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  • Fix TypeError when getting transcripts from gene
  • Fix ValueError when getting aliases from SeqRepoDataProxy

v0.2.2: Merge pull request #105 from cancervariants/issue-103

13 May 15:50
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  • Add support for protein, transcript, and genomic deletions

v0.2.1: Merge pull request #104 from cancervariants/gene-normalizer

11 May 21:00
f592774
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  • Instantiate gene-normalizer once in init

v0.2.0: Merge pull request #104 from cancervariants/gene-normalizer

07 May 19:49
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  • Support protein delins