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Links to bioconda in installation tutorial
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DrYak committed Jun 7, 2024
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Expand Up @@ -95,7 +95,7 @@ Now that you have setup the software necessary to start using V-pipe, you can fo

For advanced users: If your are fluent with these tools, you can:

* directly download and install [bioconda](https://bioconda.github.io/user/install.html) and [snakemake](https://snakemake.readthedocs.io/en/stable/getting_started/installation.html#installation-via-conda),
* directly download and install [Miniforge3](https://github.com/conda-forge/miniforge#Download), setup [bioconda](https://bioconda.github.io/index.html#usage) and install [snakemake](https://snakemake.readthedocs.io/en/stable/getting_started/installation.html#installation-via-conda),
* specifiy your V-pipe configuration, and start using V-pipe

Use `--use-conda` to [automatically download and install](https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#integrated-package-management) any further pipeline dependencies. Please refer to the documentation for additional instructions.
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