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Version 0.9
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@DrYak DrYak released this 29 Mar 15:10
· 22 commits to master since this release
v0.9
436b520
  • Converted to a proper python package with poewtry and click
    • Command format has changed
  • Integrated into V-pipe
  • Tool for generating list of mutations from Cov-Spectrum to be used in
    creating COJAC's specific YAML files
  • Select API end-point on Cov-Spectrum (ENA or GISAID)
  • Accesskey for non-open (GISAID) on Cov-Spectrum
  • Tool for converting list of mutations from TSV on Covariants.org repo
  • Partial support for aarch64
    • pysam still missing on bioconda

Publication:

  • change of literature ref to Nature Microbiology
  • Notebooks used in publication more portable
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