Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Standardize data paths #34

Merged
merged 2 commits into from
Nov 23, 2024
Merged

Standardize data paths #34

merged 2 commits into from
Nov 23, 2024

Conversation

pawel-czyz
Copy link
Member

This PR resolves issue #30, standardizing the data paths, so that we can both run exactly the same notebooks and workflows, without the needs to adjust them.

To start using it, you may will to either copy deconvolved.csv and var_dates.yaml into the data/main directory or create softlinks for them via:

$ ln -s PATH_TO_DECONVOLVED data/main/deconvolved.csv
$ ln -s PATH_TO_VAR_DATES data/main/var_dates.yaml

@pawel-czyz pawel-czyz added the refactor Changes refactoring the code label Nov 23, 2024
@pawel-czyz pawel-czyz linked an issue Nov 23, 2024 that may be closed by this pull request
Standardize the data paths #30
Closed
@pawel-czyz pawel-czyz changed the title Resolve issue 30 Standardize data paths Nov 23, 2024
@dr-david dr-david merged commit 67b6b30 into main Nov 23, 2024
1 check passed
@dr-david dr-david deleted the issue-30 branch November 23, 2024 12:33
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@dr-david dr-david dr-david left review comments

Assignees
No one assigned
Labels
refactor Changes refactoring the code
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

Standardize the data paths
2 participants
@pawel-czyz @dr-david