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Actions - slim updated
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actions-user committed Jan 1, 2024
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4 changes: 2 additions & 2 deletions external-dev/aopo-slim.owl
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<terms:license rdf:resource="https://hpo.jax.org/app/license"/>
<pav:importedFrom>https://raw.githubusercontent.com/jmillanacosta/aop-ontology/patch-1/aopo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2023-12-01 01:36:46</oboInOwl:date>
<oboInOwl:date>27:10:2023 19:30</oboInOwl:date>
<oboInOwl:date>07:12:2023 17:27</oboInOwl:date>
<oboInOwl:date>2024-01-01 01:36:43</oboInOwl:date>
<oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
<oboInOwl:default-namespace>human_phenotype</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
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2 changes: 1 addition & 1 deletion external-dev/bao-slim.owl
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Expand Up @@ -24,7 +24,7 @@
<dc:license rdf:resource="https://creativecommons.org/licenses/by-sa/4.0/"/>
<pav:importedFrom>http://bioassayontology.org/bao/bao_complete_merged.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2023-12-01 01:36:53</oboInOwl:date>
<oboInOwl:date>2024-01-01 01:36:51</oboInOwl:date>
<rdfs:comment>Contact:
Stephan Schurer
stephan dot schurer at gmail dot com</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/bfo-slim.owl
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Expand Up @@ -45,7 +45,7 @@
<dc:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/bfo/classes-only.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2023-12-01 01:36:56</oboInOwl:date>
<oboInOwl:date>2024-01-01 01:36:53</oboInOwl:date>
<rdfs:comment xml:lang="en">The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO (&quot;bfo_classes_only.owl&quot;) includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl (&quot;bfo.owl&quot;). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl.

If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies.
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2 changes: 1 addition & 1 deletion external-dev/bto-slim.owl
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Expand Up @@ -20,7 +20,7 @@
<pav:importedFrom>http://purl.obolibrary.org/obo/bto.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2023-12-01 01:37:02</oboInOwl:date>
<oboInOwl:date>2024-01-01 01:36:59</oboInOwl:date>
<oboInOwl:date>23:10:2021 16:56</oboInOwl:date>
<oboInOwl:default-namespace>BrendaTissueOBO</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
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2 changes: 1 addition & 1 deletion external-dev/ccont-slim.owl
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Expand Up @@ -15,7 +15,7 @@
<pav:importedFrom>https://raw.githubusercontent.com/enanomapper/ontologies/master/internal/ccont-ext.owl</pav:importedFrom>
<efo:creator>Matthias Ganzinger, [email protected]</efo:creator>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2023-12-01 01:37:03</oboInOwl:date>
<oboInOwl:date>2024-01-01 01:37:00</oboInOwl:date>
<rdfs:label>cell culture ontology (CCONT)</rdfs:label>
<owl:versionInfo>1.1</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
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46 changes: 44 additions & 2 deletions external-dev/chebi-slim.owl
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Expand Up @@ -17,8 +17,8 @@
<owl:Ontology rdf:about="http://purl.enanomapper.net/onto/external/chebi-slim.owl">
<pav:importedFrom>http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi_lite.obo</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2023-12-01 01:39:05</oboInOwl:date>
<oboInOwl:date>27:10:2023 19:30</oboInOwl:date>
<oboInOwl:date>07:12:2023 17:27</oboInOwl:date>
<oboInOwl:date>2024-01-01 01:39:17</oboInOwl:date>
<oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:saved-by>chebi</oboInOwl:saved-by>
Expand Down Expand Up @@ -1145,6 +1145,20 @@



<!-- http://purl.obolibrary.org/obo/CHEBI_188147 -->


<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_188147">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_24527"/>
<obo:IAO_0000115>Any herbicide composed of urea or substituted urea substructure.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace>chebi_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>CHEBI:188147</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/chebi#3_STAR"/>
<rdfs:label>urea herbicide</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/CHEBI_189675 -->


Expand Down Expand Up @@ -1272,6 +1286,34 @@



<!-- http://purl.obolibrary.org/obo/CHEBI_228138 -->


<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_228138">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23888"/>
<obo:IAO_0000115>Any agent that inhibits nociception.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace>chebi_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>CHEBI:228138</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/chebi#3_STAR"/>
<rdfs:label>antinociceptive agent</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/CHEBI_228237 -->


<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_228237">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_189683"/>
<obo:IAO_0000115>A sigma receptor modulator that activates the sigma-1 receptor.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace>chebi_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>CHEBI:228237</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/chebi#3_STAR"/>
<rdfs:label>sigma-1 receptor agonist</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/CHEBI_22917 -->


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2 changes: 1 addition & 1 deletion external-dev/cheminf-slim.owl
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Expand Up @@ -79,7 +79,7 @@
<terms:license>http://creativecommons.org/publicdomain/zero/1.0/</terms:license>
<pav:importedFrom>http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2023-12-01 01:37:07</oboInOwl:date>
<oboInOwl:date>2024-01-01 01:37:05</oboInOwl:date>
<rdfs:comment xml:lang="en">An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO</rdfs:comment>
<rdfs:comment>Document containing upporting external terms</rdfs:comment>
<rdfs:comment>IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/chmo-slim.owl
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Expand Up @@ -19,7 +19,7 @@
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/chmo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2023-12-01 01:39:11</oboInOwl:date>
<oboInOwl:date>2024-01-01 01:39:23</oboInOwl:date>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:saved-by>batchelorc</oboInOwl:saved-by>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
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92 changes: 40 additions & 52 deletions external-dev/clo-slim.owl
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Expand Up @@ -44,9 +44,9 @@
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/cl.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2023-12-01 01:39:23</oboInOwl:date>
<oboInOwl:date>2024-01-01 01:39:35</oboInOwl:date>
<rdfs:comment>See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, [email protected], University at Buffalo.</rdfs:comment>
<owl:versionInfo>2023-10-19</owl:versionInfo>
<owl:versionInfo>2023-12-05</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>

Expand Down Expand Up @@ -337,6 +337,7 @@ Annotations: IAO_0000424 &quot;http://purl.obolibrary.org/obo/BFO_0000051 some (
<terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
<terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
<rdfs:label>abbreviation</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>


Expand All @@ -351,6 +352,7 @@ Annotations: IAO_0000424 &quot;http://purl.obolibrary.org/obo/BFO_0000051 some (
<terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
<terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
<rdfs:label>plural form</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>


Expand Down Expand Up @@ -793,6 +795,18 @@ WHERE {



<!-- http://purl.obolibrary.org/obo/cl#kidney_upper_slim -->


<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/cl#kidney_upper_slim">
<terms:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-11-22T11:18:57Z</terms:date>
<rdfs:comment>a subset of general classes related to specific cell types in the kidney</rdfs:comment>
<rdfs:label>kidney_upper_slim</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>



<!-- http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate -->


Expand Down Expand Up @@ -1154,15 +1168,6 @@ WHERE {



<!-- http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION -->


<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>



<!-- http://purl.obolibrary.org/obo/uberon/core#COMPARATIVE_PREFERRED -->


Expand Down Expand Up @@ -1254,15 +1259,6 @@ WHERE {



<!-- http://purl.obolibrary.org/obo/uberon/core#PLURAL -->


<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon/core#PLURAL">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>



<!-- http://purl.obolibrary.org/obo/uberon/core#SENSU -->


Expand Down Expand Up @@ -1606,6 +1602,13 @@ WHERE {



<!-- http://purl.org/dc/terms/title -->


<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/title"/>



<!-- http://purl.org/pav/importedFrom -->


Expand Down Expand Up @@ -1692,14 +1695,18 @@ WHERE {
<!-- http://www.geneontology.org/formats/oboInOwl#created_by -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by"/>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by">
<rdfs:label>created by</rdfs:label>
</owl:AnnotationProperty>



<!-- http://www.geneontology.org/formats/oboInOwl#creation_date -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date"/>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date">
<rdfs:label>creation date</rdfs:label>
</owl:AnnotationProperty>



Expand All @@ -1724,13 +1731,6 @@ WHERE {



<!-- http://www.geneontology.org/formats/oboInOwl#editor_note -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#editor_note"/>



<!-- http://www.geneontology.org/formats/oboInOwl#evidence -->


Expand Down Expand Up @@ -1889,7 +1889,9 @@ WHERE {
<!-- http://www.geneontology.org/formats/oboInOwl#id -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
<rdfs:label>id</rdfs:label>
</owl:AnnotationProperty>



Expand Down Expand Up @@ -2021,13 +2023,6 @@ WHERE {



<!-- http://www.geneontology.org/formats/oboInOwl#seeAlso -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#seeAlso"/>



<!-- http://www.geneontology.org/formats/oboInOwl#shorthand -->


Expand Down Expand Up @@ -2093,13 +2088,6 @@ WHERE {



<!-- http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/IAO_0000232 -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/IAO_0000232"/>



<!-- http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/IAO_0000233 -->


Expand Down Expand Up @@ -2156,17 +2144,17 @@ WHERE {



<!-- http://xmlns.com/foaf/0.1/depicted_by -->


<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/depicted_by"/>



<!-- http://xmlns.com/foaf/0.1/depiction -->


<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/depiction"/>
<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/depiction">
<oboInOwl:hasDbXref>http://xmlns.com/foaf/0.1/depiction</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>depiction</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>depiction</oboInOwl:shorthand>
<rdfs:label>depiction</rdfs:label>
</owl:AnnotationProperty>



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