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tools_pizzly.cwl
Travis CI User edited this page Feb 4, 2020
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pizzly gene fusion detector
mgibio/pizzly-cwl:0.37.3
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| kallisto_kmer_size | k-mer size used when generating the kallisto index | int? | ||
| transcriptome_annotations | reference transcriptome annotations in GTF format | File | ||
| reference_transcriptome | reference transcriptome in FASTA format | File | ||
| fusion_evidence | fusion evidence generated by kallisto | File |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| unfiltered_fusion_seqs | File | |||
| unfiltered_fusions_json | File | |||
| filtered_fusion_seqs | File | |||
| filtered_fusions_json | File |