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Added script for local apptainer 1.3 install.
Also, updated default versions of GO and apptainer used in the container image building process.
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,137 @@ | ||
| #!/bin/bash | ||
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| # SPDX-License-Identifier: Apache-2.0 | ||
| # Copyright 2020-2024 Barcelona Supercomputing Center (BSC), Spain | ||
| # | ||
| # Licensed under the Apache License, Version 2.0 (the "License"); | ||
| # you may not use this file except in compliance with the License. | ||
| # You may obtain a copy of the License at | ||
| # | ||
| # http://www.apache.org/licenses/LICENSE-2.0 | ||
| # | ||
| # Unless required by applicable law or agreed to in writing, software | ||
| # distributed under the License is distributed on an "AS IS" BASIS, | ||
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| # See the License for the specific language governing permissions and | ||
| # limitations under the License. | ||
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| # These are the software versions being installed | ||
| # in the virtual environment | ||
| : ${APPTAINER_VER:=1.3.6} | ||
| : ${GO_VER:=1.23.4} | ||
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| # These are placeholders | ||
| : ${GO_OS:=linux} | ||
| : ${GO_ARCH:=amd64} | ||
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| # Getting the installation directory | ||
| wfexsDir="$(dirname "$0")" | ||
| case "${wfexsDir}" in | ||
| /*) | ||
| # Path is absolute | ||
| true | ||
| ;; | ||
| *) | ||
| # Path is relative | ||
| wfexsDir="$(readlink -f "${wfexsDir}")" | ||
| ;; | ||
| esac | ||
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| downloadDir="$(mktemp -d --tmpdir wfexs_apptainer_installer.XXXXXXXXXXX)" | ||
| echo "$0: ${downloadDir} will be used to download third party dependencies, and later removed" | ||
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| cleanup() { | ||
| set +e | ||
| # This is needed in order to avoid | ||
| # lots of "permission denied" messages | ||
| chmod -R u+w "${downloadDir}" | ||
| rm -rf "${downloadDir}" | ||
| } | ||
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| cleanuperr() { | ||
| cleanup | ||
| exit 1 | ||
| } | ||
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| trap cleanup EXIT | ||
| trap cleanuperr ERR | ||
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| set -eu | ||
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| doForce= | ||
| if [ $# -gt 0 ]; then | ||
| if [ "$1" == "force" ] ; then | ||
| doForce=1 | ||
| if [ $# -gt 1 ] ; then | ||
| APPTAINER_VER="$2" | ||
| if [ $# -gt 2 ] ; then | ||
| GO_VER="$3" | ||
| fi | ||
| fi | ||
| fi | ||
| fi | ||
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| # Before installing, check whether apptainer is already available | ||
| if [ -z "$doForce" ] ; then | ||
| if type -a apptainer >& /dev/null ; then | ||
| echo "Apptainer $(apptainer version) is already available in the system. Skipping install" | ||
| exit 0 | ||
| fi | ||
| fi | ||
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| # First, be sure the environment is ready to be used | ||
| if [ $# -gt 0 ]; then | ||
| shift $# | ||
| fi | ||
| # Second, let's load the environment in order to install | ||
| # apptainer in the python profile | ||
| trap - ERR | ||
| source "$wfexsDir"/basic-installer.bash | ||
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| failed= | ||
| for cmd in mksquashfs squashfuse fuse2fs ; do | ||
| set +e | ||
| type -a "$cmd" 2> /dev/null | ||
| retval=$? | ||
| set -e | ||
| if [ "$retval" -ne 0 ] ; then | ||
| failed=1 | ||
| echo "ERROR: Command $cmd not found in PATH and needed for the installation" | ||
| fi | ||
| done | ||
| trap cleanuperr ERR | ||
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| if [ -n "$failed" ] ; then | ||
| exit 1 | ||
| fi | ||
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| # Now, it is time to check apptainer binaries availability | ||
| if [ -z "$doForce" ] ; then | ||
| if [ -x "${envDir}/bin/apptainer" ] ; then | ||
| echo "Apptainer $(apptainer version) is already available in the environment. Skipping install" | ||
| exit 0 | ||
| fi | ||
| fi | ||
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| # Compilation artifacts should go to the temporary download directory | ||
| checkInstallGO "${GO_VER}" "${platformOS}" "${platformArchGO}" "${downloadDir}" | ||
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| # Fetch and compile apptainer | ||
| apptainerBundlePrefix=apptainer-"${APPTAINER_VER}" | ||
| apptainerBundle="${apptainerBundlePrefix}".tar.gz | ||
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| ( cd "${downloadDir}" && curl -L -O https://github.com/apptainer/apptainer/releases/download/v"${APPTAINER_VER}"/"${apptainerBundle}" ) | ||
| tar -x -z -C "${downloadDir}" -f "${downloadDir}/${apptainerBundle}" | ||
| # Removing apptainer bundle | ||
| rm "${downloadDir}/${apptainerBundle}" | ||
| cd "${downloadDir}"/"${apptainerBundlePrefix}" | ||
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| # Now, the right moment to compile and install rootless apptainer | ||
| ./mconfig -b ./builddir --without-suid --prefix="${envDir}" | ||
| make -C ./builddir | ||
| make -C ./builddir install | ||
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| # Last, in order to keep compatibility, there should be a symlink called | ||
| # singularity pointing to apptainer | ||
| ln -sf apptainer "${envDir}"/bin/singularity |