Update README.md #33
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| name: build_and_publish | |
| on: | |
| push: | |
| branches: | |
| - stable | |
| - main | |
| jobs: | |
| get_version: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout code | |
| id: git_checkout | |
| uses: actions/checkout@v3 | |
| - name: Get version | |
| id: get_version | |
| run: | | |
| CURRENT_VERSION=$(sed -n '/^current_version/{ s/^.\+ = //; p; }' .bumpversion.cfg) | |
| if [[ "${GITHUB_REF}" == 'refs/heads/stable' ]]; then | |
| echo "::set-output name=version::${CURRENT_VERSION}" | |
| elif [[ "${GITHUB_REF}" == 'refs/heads/main' ]]; then | |
| DEV_VERSION="${CURRENT_VERSION}"+dev$(echo "${GITHUB_SHA}" | cut -c-7) | |
| echo "::set-output name=version::${DEV_VERSION}" | |
| echo "::set-output name=bump_version::yes" | |
| else | |
| echo "got bad gh ref: ${GITHUB_REF}" 1>&2 | |
| exit 1 | |
| fi | |
| outputs: | |
| bump_version: ${{ steps.get_version.outputs.bump_version }} | |
| version: ${{ steps.get_version.outputs.version }} | |
| build_and_publish_on_conda: | |
| runs-on: ubuntu-latest | |
| needs: get_version | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| VERSION: ${{ needs.get_version.outputs.version }} | |
| steps: | |
| - name: Checkout code | |
| id: git_checkout | |
| uses: actions/checkout@v3 | |
| - name: Setup conda | |
| id: setup_conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: 3.9 | |
| miniforge-variant: Mambaforge-pypy3 | |
| channels: umccr,bioconda,conda-forge,defaults | |
| channel-priority: true | |
| - name: Prepare env | |
| id: prepare_env | |
| run: | | |
| mamba install boa anaconda-client bump2version | |
| # When on development branch (inferred from bump_version value), append '-dev' to package name and set | |
| # commit-specific version | |
| - name: Set package name and version | |
| if: ${{ needs.get_version.outputs.bump_version == 'yes' }} | |
| run: | | |
| sed -i 's/name: bactabolize/name: bactabolize-dev/' conda/bactabolize/meta.yaml; | |
| bump2version patch \ | |
| --new-version "${VERSION}" \ | |
| --allow-dirty \ | |
| --no-commit | |
| - name: Build and upload conda package | |
| run: | | |
| conda mambabuild \ | |
| --token "${{ secrets.ANACONDA_TOKEN }}" \ | |
| conda/bactabolize/ | |
| build_and_publish_on_dockerhub: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - get_version | |
| - build_and_publish_on_conda | |
| # Only push on push to stable, which implicitly should be only version bumps | |
| if: github.ref == 'refs/heads/stable' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| DOCKERHUB_REPO: "docker.io/scwatts/bactabolize" | |
| VERSION: ${{ needs.get_version.outputs.version }} | |
| steps: | |
| - name: Checkout code | |
| id: git_checkout | |
| uses: actions/checkout@v3 | |
| - name: Build Docker image | |
| run: | | |
| docker build \ | |
| --tag "${DOCKERHUB_REPO}:${VERSION}" \ | |
| --file docker/Dockerfile \ | |
| ./ | |
| - name: DockerHub auth | |
| run: | | |
| echo "${{ secrets.DOCKERHUB_TOKEN }}" | \ | |
| docker login \ | |
| --username "${{ secrets.DOCKERHUB_USERNAME }}" \ | |
| --password-stdin | |
| - name: DockerHub push | |
| run: | | |
| docker push "${DOCKERHUB_REPO}:${VERSION}" |