Added 313 to PyPi publish

.github/workflows/publish-to-pypi.yml

@@ -45,6 +45,11 @@ jobs:
             platform_id: manylinux_x86_64
             manylinux_image: manylinux2014
             python_version: "3.12"
+          - os: ubuntu-22.04
+            python: 313
+            platform_id: manylinux_x86_64
+            manylinux_image: manylinux2014
+            python_version: "3.13"
 
           # MacOS x86_64
           - os: macos-12
@@ -63,6 +68,10 @@ jobs:
             python: 312
             platform_id: macosx_x86_64
             python_version: "3.12"
+          - os: macos-12
+            python: 313
+            platform_id: macosx_x86_64
+            python_version: "3.13"
 
           # MacOS arm64
           - os: macos-14
@@ -81,6 +90,10 @@ jobs:
             python: 312
             platform_id: macosx_arm64
             python_version: "3.12"
+          - os: macos-14
+            python: 313
+            platform_id: macosx_arm64
+            python_version: "3.13"
 
     steps:
       - name: Checkout LePhare
@@ -114,7 +127,7 @@ jobs:
     - uses: actions/checkout@v4
       with:
         fetch-depth: 0  # Optional, use if you use setuptools_scm
-        submodules: true  # Optional, use if you have submodules
+        submodules: recursive  # Optional, use if you have submodules
 
     - name: Build SDist
       run: pipx run build --sdist

.github/workflows/smoke-test.yml

@@ -20,7 +20,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
 
     steps:
     - uses: actions/checkout@v4

.github/workflows/testing-and-coverage.yml

@@ -17,7 +17,7 @@ jobs:
       INCLUDE_COVERAGE: TRUE
     strategy:
       matrix:
-        python-version: ['3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
 
     steps:
     - uses: actions/checkout@v4
@@ -43,7 +43,7 @@ jobs:
 
     - name: Collect C++ coverage
       run: |
-        lcov --output-file coverage.cpp --capture --directory build
+        lcov --output-file coverage.cpp --capture --directory build --rc geninfo_unexecuted_blocks=1 --ignore-errors mismatch,gcov
         lcov --output-file coverage.cpp --extract coverage.cpp $PWD/src/"*"
         cat coverage.lcov coverage.cpp > coverage.txt
 

tests/lephare/test_data_retrieval.py

@@ -42,7 +42,16 @@ def test_read_list_file_remote(mock_get):
 
 def test_make_default_retriever(data_registry_file):
     mock_registry_content = "file1.txt hash1\nfile2.txt hash2"
-    with patch("builtins.open", mock_open(read_data=mock_registry_content)):
+
+    # Create a mock_open instance
+    m_open = mock_open(read_data=mock_registry_content)
+
+    # Mock __enter__ and __exit__ for context management
+    m_open.return_value.__enter__ = lambda self: self
+    m_open.return_value.__exit__ = lambda self, exc_type, exc_val, exc_tb: None
+
+    # Patch the built-in open method with the mocked version
+    with patch("builtins.open", m_open):
         retriever = make_default_retriever()
         assert retriever.base_url == DEFAULT_BASE_DATA_URL
         assert retriever.path == Path(DEFAULT_LOCAL_DATA_PATH)