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Ij/complex genotyping#251

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ionox0 wants to merge 9 commits intomastermskcc/ACCESS-Pipeline:masterfrom ij/complex_genotypingmskcc/ACCESS-Pipeline:ij/complex_genotypingCopy head branch name to clipboard

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Commits on Feb 1, 2021

• Update vardict_paired.cwl

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Commits on Sep 8, 2021

• updates for supporting complex variants

  

  andurill

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• record.INFO['SHIFT3_ADJUSTED'] should be 0 when there is no anchor base adjustment

  

  andurill

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Commits on Sep 9, 2021

• install samtools and bedtools through conda

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Commits on Sep 13, 2021

• use pyvcf to add SHIFT3_ADJUSTED header to vardict vcf

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Commits on Sep 15, 2021

• Merge branch 'aef--vardict' into ij/complex_genotyping

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Commits on Sep 24, 2021

• Update filter_vardict.py

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Commits on Oct 6, 2021

• Update gbcms_params.yaml

  allanbolipata

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• Merge pull request #252 from allanbolipata/patch-1

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