Adding mgi fastq demultipexing via mgikit

conf/test_mgikit.config

@@ -0,0 +1,30 @@
+/*
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    Nextflow config file for running minimal tests
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    Defines input files and everything required to run a fast and simple pipeline test.
+
+    Use as follows:
+        nextflow run nf-core/demultiplex -profile test_sgdemux,<docker/singularity> --outdir <OUTDIR>
+
+----------------------------------------------------------------------------------------
+*/
+stub = true
+params {
+    config_profile_name        = 'Test MGIKIT profile'
+    config_profile_description = 'Minimal test dataset to check pipeline function'
+
+    // Limit resources so that this can run on GitHub Actions
+    max_cpus   = 2
+    max_memory = '4.GB'
+    max_time   = '1.h'
+
+    // Input data
+    input = '/mnt/d/run_d/dem_run/ds01/flowcell_input.csv'
+    demultiplexer = 'mgikit'
+    skip_tools = "falco,fastp,multiqc,md5sum"
+}
+
+process {
+    executer = "local"
+}

modules.json

@@ -60,6 +60,11 @@
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
+                    "mgikit/demultiplex": {
+                        "branch": "master",
+                        "git_sha": "0bf42a3bdf105ddc58f6cc5523c86b4617c4ed04",
+                        "installed_by": ["modules"]
+                    },
                     "multiqc": {
                         "branch": "master",
                         "git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",