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Remove component update script #3464

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merged 3 commits into from
Mar 3, 2025
Merged

Remove component update script #3464

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a525ce9
fix udpate_components script
mashehu Feb 24, 2025
6f63caa
remove component update script
mashehu Feb 24, 2025
c8a59cb
Merge branch 'dev' into fix-component-update-script
ningyuxin1999 Mar 3, 2025
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15 changes: 12 additions & 3 deletions .github/workflows/update_components_template.yml
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Expand Up @@ -12,14 +12,23 @@ jobs:
steps:
- name: Checkout repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
with:
ref: dev

- name: Set up Python
uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5
with:
python-version: "3.x"

- name: Install Nextflow
uses: nf-core/setup-nextflow@v2
with:
version: "24.04.2"

- name: Install nf-core
run: pip install nf-core
run: |
python -m pip install --upgrade pip
pip install .

- name: Update modules
run: nf-core modules update --all --no-preview
Expand All @@ -36,11 +45,11 @@ jobs:
git config user.name "nf-core-bot"
git add .
git status
git commit -m "[automated] Fix code linting"
git commit -m "[automated] Update components in template"

# Open a new PR to dev with the changes
- name: Create PR
run: |
git checkout -b update-modules
git push origin update-modules
gh pr create --title "Update modules in template" --body "This PR updates the modules in the pipeline template" --base dev --head update-modules
gh pr create --title "Template: Update components in template" --body "This PR updates the modules and subworkflows in the pipeline template" --base dev --head update-modules
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