fix scib kbet by pinning scipy to <= 1.13 (see theislab/scib#412)

openproblems-bio · Sep 4, 2024 · 3955196 · 3955196
1 parent bf78774
commit 3955196
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/src/tasks/batch_integration/metrics/kbet/config.vsh.yaml b/src/tasks/batch_integration/metrics/kbet/config.vsh.yaml
@@ -51,6 +51,7 @@ platforms:
           - scib==1.1.5
           - rpy2>=3
           - anndata2ri
+          - scipy<=1.13
   - type: nextflow
     directives: 
       label: [midtime, midmem, lowcpu]