Skip to content

@CDCgov Centers for Disease Control and Prevention

Change the repository type filter

All

    Repositories list

    403 repositories

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •40•73•1.4k•125•Updated Nov 5, 2024Nov 5, 2024

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      •
      Apache License 2.0
      •0•3•38•3•Updated Nov 5, 2024Nov 5, 2024

    • data-exchange-upload

      Public
      Enterprise Data Exchange (DEX) is a new cloud-native centralized data ingestion, validation, and observation service scoped for common data types (HL7, FHIR, CDA, XML, CSV) sent to the CDC. It helps public health stakeholders who send data to the CDC while reducing the maintenance efforts, complexity, and duplication of ingestion points to CDC.
      Go
      •
      Apache License 2.0
      •3•7•42•21•Updated Nov 5, 2024Nov 5, 2024

    • phdi

      Public
      fhir
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •14•34•225•13•Updated Nov 5, 2024Nov 5, 2024

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •19•34•0•10•Updated Nov 5, 2024Nov 5, 2024

    • covidhub-sandbox

      Public
      R
      •
      Apache License 2.0
      •1•1•0•2•Updated Nov 5, 2024Nov 5, 2024

    • data-exchange-processing-status

      Public
      Kotlin
      •
      Apache License 2.0
      •0•2•1•5•Updated Nov 5, 2024Nov 5, 2024

    • NEDSS-Helm

      Public
      This repository is created for NEDSS Helm charts.
      Smarty
      •
      Apache License 2.0
      •1•2•0•5•Updated Nov 5, 2024Nov 5, 2024

    • reportstream-sftp-ingestion

      Public
      Go
      •
      Apache License 2.0
      •0•5•0•2•Updated Nov 5, 2024Nov 5, 2024

    • childhood-immunization-demand-calculator

      Public
      Childhood immunization demand calculator
      Python
      •
      Apache License 2.0
      •0•0•6•4•Updated Nov 5, 2024Nov 5, 2024

    • wastewater-informed-covid-forecasting

      Public
      Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
      R
      •
      Apache License 2.0
      •8•43•77•7•Updated Nov 5, 2024Nov 5, 2024

    • dibbs-query-connector

      Public
      A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •0•4•14•3•Updated Nov 5, 2024Nov 5, 2024

    • trusted-intermediary

      Public
      Bringing together healthcare providers by reducing the connection burden.
      Groovy
      •
      Apache License 2.0
      •5•11•172•5•Updated Nov 5, 2024Nov 5, 2024

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      reactjsterraformgraphqlspring-boot
      Java
      •
      Creative Commons Zero v1.0 Universal
      •53•58•364•18•Updated Nov 5, 2024Nov 5, 2024

    • NEDSS-Modernization

      Public
      Java
      •2•18•0•5•Updated Nov 5, 2024Nov 5, 2024

    • cfa-epinow2-pipeline

      Public
      R
      •
      Apache License 2.0
      •2•10•28•3•Updated Nov 5, 2024Nov 5, 2024

    • phdi-playground

      Public
      HCL
      •
      Apache License 2.0
      •2•3•3•8•Updated Nov 5, 2024Nov 5, 2024

    • MIRA-NF

      Public
      Nextflow
      •
      MIT License
      •1•3•0•1•Updated Nov 5, 2024Nov 5, 2024

    • seqsender

      Public
      Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
      bioinformatics-pipelinegenbankncbi-submissionncbi-genbankcdcsrancbi-srancbi-biosamplesgisaidgisaid-uploader
      HTML
      •
      Apache License 2.0
      •11•32•5•0•Updated Nov 5, 2024Nov 5, 2024

    • Rt-without-renewal

      Public
      Julia
      •
      Apache License 2.0
      •3•19•73•4•Updated Nov 5, 2024Nov 5, 2024

    • NEDSS-DataCompare

      Public
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • ReportVision

      Public
      Intelligent Data Workflow Automation
      TypeScript
      •
      Apache License 2.0
      •2•1•51•5•Updated Nov 5, 2024Nov 5, 2024

    • ixa

      Public
      Rust
      •
      Apache License 2.0
      •0•9•9•7•Updated Nov 5, 2024Nov 5, 2024

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •19•57•9•2•Updated Nov 5, 2024Nov 5, 2024

    • NEDSS-DataReporting

      Public
      Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •1•2•0•0•Updated Nov 4, 2024Nov 4, 2024

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •2•6•0•0•Updated Nov 4, 2024Nov 4, 2024

    • RecordLinker

      Public
      The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
      pythonsqlalchemyfastapi
      Python
      •
      Apache License 2.0
      •0•2•13•3•Updated Nov 4, 2024Nov 4, 2024

    • dibbs-aws

      Public
      HCL
      •
      Creative Commons Zero v1.0 Universal
      •3•3•6•1•Updated Nov 4, 2024Nov 4, 2024

    • cfa_azure

      Public
      Python
      •
      Apache License 2.0
      •2•9•10•1•Updated Nov 4, 2024Nov 4, 2024