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    441 repositories

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      •
      Apache License 2.0
      •3•8•66•3•Updated Mar 6, 2025Mar 6, 2025

    • dibbs-vm

      Public
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •4•0•30•3•Updated Mar 6, 2025Mar 6, 2025

    • reedfrost

      Public
      Python
      •
      Apache License 2.0
      •0•0•2•1•Updated Mar 6, 2025Mar 6, 2025

    • wastewater-informed-covid-forecasting

      Public
      Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
      R
      •
      Apache License 2.0
      •15•47•86•7•Updated Mar 6, 2025Mar 6, 2025

    • ixa-epi-isolation

      Public
      Rust
      •
      Apache License 2.0
      •2•1•7•5•Updated Mar 6, 2025Mar 6, 2025

    • dibbs-ecr-viewer

      Public
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •1•2•92•12•Updated Mar 6, 2025Mar 6, 2025

    • cfa_azure

      Public
      pythonazureazure-batchazure-container-registryazure-blob-storage
      Python
      •
      Apache License 2.0
      •5•9•8•2•Updated Mar 6, 2025Mar 6, 2025

    • covid19-forecast-hub

      Public
      A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.
      R
      •
      Apache License 2.0
      •17•11•11•1•Updated Mar 6, 2025Mar 6, 2025

    • cfa-ring-vax-widget

      Public
      Python
      •
      Apache License 2.0
      •2•0•13•3•Updated Mar 6, 2025Mar 6, 2025

    • cfa-ngm-widget

      Public
      Python
      •
      Apache License 2.0
      •2•0•8•1•Updated Mar 6, 2025Mar 6, 2025

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •44•75•1.2k•184•Updated Mar 6, 2025Mar 6, 2025

    • cfa-config-validation

      Public
      Modeling pipeline config validation microservice.
      Python
      •
      Apache License 2.0
      •3•0•0•3•Updated Mar 6, 2025Mar 6, 2025

    • childhood-immunization-demand-calculator

      Public
      Childhood immunization demand calculator
      Python
      •
      Apache License 2.0
      •3•0•4•1•Updated Mar 6, 2025Mar 6, 2025

    • data-exchange-processing-status

      Public
      The Public Health Data Observability (PHDO) Processing Status API (PS API) was developed to provide visibility into the status and performance of file uploads. The PS API provides the ability to receive reports about the status of uploads, and to develop custom queries to ask detailed questions about the data being uploaded and processed.
      Kotlin
      •
      Apache License 2.0
      •2•3•0•4•Updated Mar 6, 2025Mar 6, 2025

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •27•69•15•1•Updated Mar 6, 2025Mar 6, 2025

    • Rnssp-rmd-templates

      Public
      Rnssp R Markdown templates are custom-built, parameterized R Markdown templates with seamless integration to the Rnssp R package to enhance user experiences and streamline workflows.
      cdcessencensspessence-apinssp-cop
      R
      •
      Apache License 2.0
      •13•13•1•0•Updated Mar 6, 2025Mar 6, 2025

    • prime-simplereport-site

      Public
      Landing / marketing site for the SimpleReport application
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •11•11•8•2•Updated Mar 5, 2025Mar 5, 2025

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •3•2•0•0•Updated Mar 5, 2025Mar 5, 2025

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •6•6•0•0•Updated Mar 5, 2025Mar 5, 2025

    • NEDSS-NNDSS-Case-Notifications

      Public
      Dockerfile
      •
      Apache License 2.0
      •1•0•0•1•Updated Mar 5, 2025Mar 5, 2025

    • tostadas

      Public
      🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
      pythondockermetadatabioinformaticsrna-seqpipelinenextflowgeneticsazuresequencing
      Python
      •
      Apache License 2.0
      •13•27•14•3•Updated Mar 5, 2025Mar 5, 2025

    • cfa-immunization-uptake-projection

      Public
      Python
      •
      Apache License 2.0
      •3•1•13•1•Updated Mar 5, 2025Mar 5, 2025

    • Rnssp-templates-docs

      Public
      Online Documentation for Rnssp R Markdown Templates
      documentationhugocdcessencensspessence-apinssp-cop
      HTML
      •
      Apache License 2.0
      •9•4•0•0•Updated Mar 5, 2025Mar 5, 2025

    • forecasttools

      Public
      R tools for short-term forecasting
      R
      •
      Apache License 2.0
      •2•4•11•1•Updated Mar 5, 2025Mar 5, 2025

    • cfa-actions

      Public
      GitHub Actions by CDC's CFA team
      actionsgithub-actionsgha
      Python
      •6•4•7•1•Updated Mar 5, 2025Mar 5, 2025

    • dibbs-query-connector

      Public
      A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •4•6•32•4•Updated Mar 5, 2025Mar 5, 2025

    • NEDSS-Modernization

      Public
      Java
      •4•20•0•5•Updated Mar 5, 2025Mar 5, 2025

    • NEDSS-NNDSS

      Public
      Java
      •
      Apache License 2.0
      •3•0•0•1•Updated Mar 5, 2025Mar 5, 2025

    • cfa-config-generator

      Public
      Python
      •
      Apache License 2.0
      •2•1•2•1•Updated Mar 5, 2025Mar 5, 2025

    • NEDSS-DataReporting

      Public
      Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      •
      Apache License 2.0
      •3•0•0•4•Updated Mar 5, 2025Mar 5, 2025