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    419 repositories

    • data-exchange-upload

      Public
      The Public Health Data Operations (PHDO) Upload service provides secure ingestion, delivery, and observability of public health files from data senders to CDC program target locations via Application Programming Interfaces (APIs).
      Go
      •
      Apache License 2.0
      •4•9•42•17•Updated Jan 11, 2025Jan 11, 2025

    • tostadas

      Public
      🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
      pythondockermetadatabioinformaticsrna-seqpipelinenextflowgeneticsazuresequencing
      Python
      •
      Apache License 2.0
      •9•27•20•1•Updated Jan 11, 2025Jan 11, 2025

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •21•36•0•10•Updated Jan 11, 2025Jan 11, 2025

    • NEDSS-Infrastructure

      Public
      HCL
      •
      Apache License 2.0
      •1•2•0•1•Updated Jan 11, 2025Jan 11, 2025

    • Rt-without-renewal

      Public
      Julia
      •
      Apache License 2.0
      •5•21•64•4•Updated Jan 11, 2025Jan 11, 2025

    • DynODE

      Public
      CDC/CFA/Predict/Scenarios ODE Modeling Framework
      Python
      •
      Apache License 2.0
      •1•6•40•3•Updated Jan 11, 2025Jan 11, 2025

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •40•75•1.3k•121•Updated Jan 11, 2025Jan 11, 2025

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •19•61•10•1•Updated Jan 11, 2025Jan 11, 2025

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      reactjsterraformgraphqlspring-boot
      Java
      •
      Creative Commons Zero v1.0 Universal
      •55•58•381•16•Updated Jan 11, 2025Jan 11, 2025

    • dibbs-query-connector

      Public
      A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •1•4•33•2•Updated Jan 10, 2025Jan 10, 2025

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •2•2•0•0•Updated Jan 10, 2025Jan 10, 2025

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •3•6•0•0•Updated Jan 10, 2025Jan 10, 2025

    • trusted-intermediary

      Public
      Bringing together healthcare providers by reducing the connection burden.
      Groovy
      •
      Apache License 2.0
      •6•11•136•4•Updated Jan 10, 2025Jan 10, 2025

    • data-exchange-processing-status

      Public
      The Public Health Data Observability (PHDO) Processing Status API (PS API) was developed to provide visibility into the status and performance of file uploads. The PS API provides the ability to receive reports about the status of uploads, and to develop custom queries to ask detailed questions about the data being uploaded and processed.
      Kotlin
      •
      Apache License 2.0
      •1•2•0•1•Updated Jan 10, 2025Jan 10, 2025

    • NEDSS-DataIngestion

      Public
      Data Ingestion for Modernization of NEDSS Project by Enquizit
      Java
      •
      Apache License 2.0
      •3•6•0•3•Updated Jan 10, 2025Jan 10, 2025

    • NEDSS-Helm

      Public
      This repository is created for NEDSS Helm charts.
      Smarty
      •
      Apache License 2.0
      •2•2•0•4•Updated Jan 10, 2025Jan 10, 2025

    • cfa-rt-postprocessing

      Public
      Python
      •
      Apache License 2.0
      •1•1•8•2•Updated Jan 10, 2025Jan 10, 2025

    • NEDSS-Modernization

      Public
      Java
      •3•18•0•4•Updated Jan 10, 2025Jan 10, 2025

    • Form-5034

      Public
      2•0•0•0•Updated Jan 10, 2025Jan 10, 2025

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      •
      Apache License 2.0
      •1•5•51•9•Updated Jan 10, 2025Jan 10, 2025

    • NEDSS-DataReporting

      Public
      Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      •
      Apache License 2.0
      •1•0•0•2•Updated Jan 10, 2025Jan 10, 2025

    • clean-genes

      Public
      A rust crate that automatically cleans up a gene alignment by trimming to ORF and identifying and/or removing problematic sequences.
      data-sciencebioinformaticsfastadata-normalizationdata-cleaningsequence-alignmentsequence-analysissequence-annotationncirdncird-id
      Rust
      •
      Apache License 2.0
      •1•1•7•0•Updated Jan 10, 2025Jan 10, 2025

    • pynssp

      Public
      A Python package for the National Syndromic Surveillance Program (NSSP) and its Community of Practice. A collection of classes and methods to advance the practice of Syndromic Surveillance.
      cdcessencensspessence-apinssp-cop
      Python
      •
      Apache License 2.0
      •6•7•0•0•Updated Jan 10, 2025Jan 10, 2025

    • dibbs-site

      Public
      JavaScript
      •2•1•0•8•Updated Jan 10, 2025Jan 10, 2025

    • cfa-immunization-uptake-projection

      Public
      Python
      •
      Apache License 2.0
      •1•1•16•4•Updated Jan 10, 2025Jan 10, 2025

    • NEDSS-DataCompare

      Public
      Java
      •
      Apache License 2.0
      •1•0•0•1•Updated Jan 10, 2025Jan 10, 2025

    • cfa-epinow2-pipeline

      Public
      R
      •
      Apache License 2.0
      •3•10•40•3•Updated Jan 10, 2025Jan 10, 2025

    • RecordLinker

      Public
      The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
      pythonsqlalchemyfastapi
      Python
      •
      Apache License 2.0
      •1•3•18•3•Updated Jan 10, 2025Jan 10, 2025

    • stimulant_opioid_algorithm_medical_codes_SAS

      Public
      SAS
      •
      Apache License 2.0
      •1•0•0•0•Updated Jan 10, 2025Jan 10, 2025

    • cfa-ring-vax-widget

      Public
      Python
      •
      Apache License 2.0
      •0•0•9•3•Updated Jan 10, 2025Jan 10, 2025