Repositories list

• tidytacos

  Public
  Functions to manipulate and visualize microbial community data

  visualizationrtidy+ 2microbial-communitiesmicrobiome-analysis

  R

  •

  GNU General Public License v3.0

  •1•10•1•0•Updated Jan 31, 2025Jan 31, 2025

• nf-whole-genome-illumina

  Public
  Nextflow

  •0•0•2•0•Updated Jan 13, 2025Jan 13, 2025

• nf-metagenome-seq-kraken-bracken

  Public
  Nextflow pipeline for metagenome sequencing reads

  Nextflow

  •0•1•1•0•Updated Nov 27, 2024Nov 27, 2024

• Citizen-science-map-of-the-vaginal-microbiome

  Public
  Repository for data and scripts used for the paper: Citizen-science map of the vaginal microbiome

  HTML

  •

  GNU General Public License v3.0

  •1•5•0•0•Updated Jun 1, 2023Jun 1, 2023

• SCARAP-testdata

  Public
  Repo with testdata, for testing the SCARAP tool

  0•0•0•0•Updated May 31, 2023May 31, 2023

• skin_acne_study

  Public
  Placeholder for our new skin/acne study

  HTML

  •1•1•0•0•Updated Dec 16, 2021Dec 16, 2021

• robustness-carrotjuice

  Public
  Scripts used for generating figures for publication in international journal of food microbiology: "Robustness of fermented carrot juice against Listeria monocytogenes, Salmonella Typhimurium and Escherichia coli O157:H7"

  0•0•0•0•Updated Sep 15, 2020Sep 15, 2020

• Galleria

  Public
  This repository contains a collection of scripts and data used for the paper : "The microbiome of the invertebrate model host Galleria mellonella is dominated by Enterococcus"

  0•0•0•0•Updated Apr 2, 2019Apr 2, 2019

• caseiGroup_mSystems_pipeline

  Public
  HTML

  •1•2•0•0•Updated May 14, 2018May 14, 2018