Repositories list

• mriqc

  Public archive
  No-reference image quality metrics for quality assessment of MRI

  Shell

  •4•1•0•0•Updated Jul 9, 2024Jul 9, 2024

• fsl-feat

  Public
  FEAT is a software tool for high quality model-based FMRI data analysis

  Dockerfile

  •3•0•0•0•Updated May 1, 2024May 1, 2024

• fsl-anat

  Public
  A Flywheel gear for running FSL's Processing Script: fsl_anat

  Python

  •1•0•0•0•Updated Apr 29, 2024Apr 29, 2024

• fsl-base

  Public
  Build contexts for base images containing various FSL versions

  Python

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• fsl-SuperBET2

  Public archive
  Modified Brain Extraction Tool 2 (BET2) from FMRIB Software Library (FSL) v5.0 called SuperBET2 deletes non-brain tissue from an image of the whole head. It can also estimate the inner and outer skull surfaces, and outer scalp surface, if you have good quality T1.

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 23, 2024Apr 23, 2024

• matlab-mcr

  Public archive
  Matlab Compiler Runtime

  Dockerfile

  •4•6•0•0•Updated Apr 18, 2024Apr 18, 2024

• bids-fmriprep

  Public archive
  This repository is archived. Please visit the new repository for updated versions of this gear (URL below).

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5•2•2•5•Updated Apr 10, 2024Apr 10, 2024

• fsl-siena-sienax

  Public
  Shell

  •0•0•0•0•Updated Mar 19, 2024Mar 19, 2024

• nobrainer-gear

  Public
  This gear wraps nobrainer for prediction on 3D imaging

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 19, 2024Mar 19, 2024

• extract-cmrr-physio

  Public
  Extract physiological log files from encoded "_PHYSIO" DICOM file generated by CMRR MB sequences (>=R015, >=VD13A)

  Python

  •0•0•2•0•Updated Mar 15, 2024Mar 15, 2024

• siemens_to_ismrmrd

  Public
  Siemens to ISMRMRD converter

  Shell

  •0•0•0•0•Updated Mar 15, 2024Mar 15, 2024

• philips_to_ismrmrd

  Public
  Philips to ISMRMRD converter

  XSLT

  •0•0•0•0•Updated Mar 15, 2024Mar 15, 2024

• openslide-to-png

  Public
  Python

  •0•3•0•0•Updated Mar 15, 2024Mar 15, 2024

• fsl-topup

  Public
  Flywheel Gear to execute TopUp from FSL

  Python

  •3•3•0•1•Updated Mar 15, 2024Mar 15, 2024

• fsl-fslreorient2std

  Public
  Python

  •0•1•0•1•Updated Mar 15, 2024Mar 15, 2024

• dicom-mr-classifier

  Public
  Python

  •4•1•0•1•Updated Mar 14, 2024Mar 14, 2024

• bids-freesurfer

  Public
  Gear that runs freesurfer on BIDS-curated data

  Python

  •

  Apache License 2.0

  •1•0•1•0•Updated Mar 14, 2024Mar 14, 2024

• freesurfer-recon-all

  Public
  Gear that runs FreeSurfer v7.2.0 Release (July 19, 2021)

  freesurferrecon-all

  Shell

  •

  MIT License

  •2•3•0•2•Updated Mar 14, 2024Mar 14, 2024

• ROI_export

  Public
  Exports ROIs as csv

  Python

  •0•1•0•0•Updated Mar 14, 2024Mar 14, 2024

• bids-qsiprep

  Public archive
  Python

  •

  MIT License

  •1•0•0•0•Updated Jan 10, 2024Jan 10, 2024

• bids-hcp

  Public archive
  Python

  •0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

• gear_sdk_audit

  Public
  Flywheel gear audit on a set of instances, or the Flywheel exchange

  Python

  •1•0•0•1•Updated Sep 29, 2023Sep 29, 2023

• os_py_ver_audit

  Public
  Flywheel gear audit on a set of instances, or the Flywheel exchange

  Python

  •1•0•0•0•Updated Sep 29, 2023Sep 29, 2023

• debug-generatefile

  Public
  Generates output file of a specific size

  Shell

  •0•0•0•0•Updated Aug 2, 2023Aug 2, 2023

• nyu_rotator_cuff_gear_suite

  Public
  A suite of gears providing management for the NYU/Siemens Rotator Cuff Tear Project

  Python

  •1•0•1•5•Updated Jul 6, 2023Jul 6, 2023

• afni_preproc_meica

  Public
  this gear runs a full afni preprocessing pipeline as well as multi echo ICA

  Python

  •0•0•0•2•Updated Jul 6, 2023Jul 6, 2023

• bruker2nifti

  Public
  Bruker to NIfTI converter

  Python

  •0•1•0•2•Updated May 31, 2023May 31, 2023

• flywheel-tutorials

  Public
  Just a mirror of

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Mar 31, 2023Mar 31, 2023

• fwgear-wsi-to-dicom-converter

  Public archive
  Flywheel Gear implementation of GCP's conversion tool for converting whole slide images to DICOM

  Python

  •

  Apache License 2.0

  •1•2•0•0•Updated Mar 13, 2023Mar 13, 2023

• afni_base

  Public
  a base docker image for afni

  Dockerfile

  •1•0•0•0•Updated Jan 23, 2023Jan 23, 2023