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@@ -121,7 +121,7 @@ These parameters must be tuned so that the graph resolves structures of interest
### example builds for diverse species
In preparation of a manuscript on `pggb`, we have developed a [set of example pangenome builds for a collection of diverse species](https://github.com/pangenome/pggb-paper/blob/main/workflows/AllSpecies.md#all-species).
In preparation of a manuscript on `pggb`, we have developed a [set of example pangenome builds for a collection of diverse species](https://github.com/pangenome/pggb-paper/blob/main/workflows/0.Preparation.md#data).
(These also use cross-validation against [`nucmer`](https://mummer4.github.io/) to evaluate graph quality.)
Examples (`-n` is optional if sequence names follow [PanSN-spec](https://github.com/pangenome/PanSN-spec)):
