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Slurm, fix duplicate jobs #157

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merged 1 commit into from
Nov 28, 2023
Merged

Slurm, fix duplicate jobs #157

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10 changes: 9 additions & 1 deletion sisyphus/simple_linux_utility_for_resource_management_engine.py
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Original file line number Diff line number Diff line change
Expand Up @@ -236,7 +236,7 @@ def submit_helper(self, call, logpath, rqmt, name, task_name, start_id, end_id,
job_id = None
if len(out) == 1:
sout = out[0].split()
if retval != 0 or len(err) > 0 or len(sout) != 4 or sout[0:3] != ref_output:
if retval != 0 or len(sout) != 4 or sout[0:3] != ref_output:
print(retval, len(err), len(sout), sout[0:3], ref_output)
logging.error("Error to submit job")
logging.error("SBATCH command: %s" % " ".join(sbatch_call))
Expand All @@ -253,6 +253,14 @@ def submit_helper(self, call, logpath, rqmt, name, task_name, start_id, end_id,
for task_id in range(start_id, end_id, step_size):
self._task_info_cache[(name, task_id)].append((job_id, "PD"))

if err:
logging.warning(f"Got error while submitting job (but job {job_id} was submitted)")
logging.warning("SBATCH command: %s" % " ".join(sbatch_call))
for line in out:
logging.warning("Output: %s" % line.decode())
for line in err:
logging.warning("Error: %s" % line.decode())

else:
logging.error("Error to submit job, return value: %i" % retval)
logging.error("SBATCH command: %s" % " ".join(sbatch_call))
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