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Corrects querying of genes Run tests #74: Commit 7f2c05b pushed by samhorsfield96
October 17, 2024 15:26 4m 51s fix_querying
fix_querying
October 17, 2024 15:26 4m 51s
Build and push Docker image Build and push Docker image #23: by samhorsfield96
October 17, 2024 10:57 9m 14s
October 17, 2024 10:57 9m 14s
Updates saving of output files for querying Run tests #73: Commit b91fc7d pushed by samhorsfield96
October 17, 2024 10:57 5m 17s fix_querying
fix_querying
October 17, 2024 10:57 5m 17s
Corrects issue with alignment of refound genes Run tests #72: Commit 12983c9 pushed by samhorsfield96
October 14, 2024 11:48 4m 40s cpp_profiling
cpp_profiling
October 14, 2024 11:48 4m 40s
Corrects issue with writing protein sequence Run tests #71: Commit 558cff8 pushed by samhorsfield96
October 14, 2024 11:19 4m 18s cpp_profiling
cpp_profiling
October 14, 2024 11:19 4m 18s
Corrects issue with get_core_gene_nodes dict iteration Run tests #70: Commit 2f32cec pushed by samhorsfield96
October 14, 2024 11:12 4m 1s cpp_profiling
cpp_profiling
October 14, 2024 11:12 4m 1s
Corrects issue with get_core_gene_nodes dict iteration Run tests #69: Commit 18b4909 pushed by samhorsfield96
October 14, 2024 11:07 4m 26s cpp_profiling
cpp_profiling
October 14, 2024 11:07 4m 26s
Enables saving of FM indexes in output directory, not where original … Run tests #68: Commit dcd0465 pushed by samhorsfield96
October 14, 2024 10:56 4m 16s cpp_profiling
cpp_profiling
October 14, 2024 10:56 4m 16s
Corrects issue with small core genome Run tests #67: Commit 1ac83f8 pushed by samhorsfield96
October 14, 2024 09:07 4m 1s cpp_profiling
cpp_profiling
October 14, 2024 09:07 4m 1s
Removes defaults channel from macOS environment Run tests #66: Commit 2be700b pushed by samhorsfield96
October 14, 2024 08:16 4m 55s cpp_profiling
cpp_profiling
October 14, 2024 08:16 4m 55s
Removes defaults channel Run tests #65: Commit 6f5068f pushed by samhorsfield96
October 14, 2024 08:15 5m 36s cpp_profiling
cpp_profiling
October 14, 2024 08:15 5m 36s
Corrects issue with genes with 0 id being incorrectly indexed Run tests #64: Commit 59fb0c0 pushed by samhorsfield96
October 12, 2024 13:13 35s cpp_profiling
cpp_profiling
October 12, 2024 13:13 35s
Fixes issue with clusters with missing centroids being reassigned inc… Run tests #63: Commit d2ee47e pushed by samhorsfield96
October 12, 2024 12:34 32s cpp_profiling
cpp_profiling
October 12, 2024 12:34 32s
Multithreads centroid scoring and corrects issue with ORF scoring Run tests #62: Commit 02c2d75 pushed by samhorsfield96
October 12, 2024 12:02 33s cpp_profiling
cpp_profiling
October 12, 2024 12:02 33s
Corrects issue where ORF not removed from cluster_map Run tests #61: Commit 6c2f943 pushed by samhorsfield96
October 11, 2024 18:37 35s cpp_profiling
cpp_profiling
October 11, 2024 18:37 35s
Lowers default score threshold Run tests #60: Commit a221051 pushed by samhorsfield96
October 11, 2024 17:03 48s cpp_profiling
cpp_profiling
October 11, 2024 17:03 48s
Corrects issue where if centroid removed no genes added to cluster Run tests #59: Commit eb49824 pushed by samhorsfield96
October 11, 2024 15:23 33s cpp_profiling
cpp_profiling
October 11, 2024 15:23 33s
Corrects issues with saving ORF_map after refinding Run tests #58: Commit f192957 pushed by samhorsfield96
October 11, 2024 14:39 35s cpp_profiling
cpp_profiling
October 11, 2024 14:39 35s
Fixes issue with passing of search_dict Run tests #57: Commit 901a786 pushed by samhorsfield96
October 11, 2024 14:08 45s cpp_profiling
cpp_profiling
October 11, 2024 14:08 45s
Corrects calculation of number of vertices Run tests #56: Commit cbd51b4 pushed by samhorsfield96
October 11, 2024 12:07 3m 14s cpp_profiling
cpp_profiling
October 11, 2024 12:07 3m 14s
Ensure low scoring ORFs are correctly removed Run tests #55: Commit 36a4eed pushed by samhorsfield96
October 11, 2024 11:08 3m 15s cpp_profiling
cpp_profiling
October 11, 2024 11:08 3m 15s
Corrects saving of ORF_map and removal of low scoring genes Run tests #54: Commit dbe9595 pushed by samhorsfield96
October 11, 2024 08:52 3m 10s cpp_profiling
cpp_profiling
October 11, 2024 08:52 3m 10s
Corrects choice of centroid Run tests #53: Commit 3f07d4f pushed by samhorsfield96
October 10, 2024 15:23 3m 16s cpp_profiling
cpp_profiling
October 10, 2024 15:23 3m 16s
Corrects generation of network and writing of fasta file Run tests #52: Commit 7c02d95 pushed by samhorsfield96
October 9, 2024 11:30 3m 28s cpp_profiling
cpp_profiling
October 9, 2024 11:30 3m 28s
Completes removal of high scoring ORF dict from panaroo runner Run tests #51: Commit 8ea266b pushed by samhorsfield96
October 9, 2024 10:51 3m 13s cpp_profiling
cpp_profiling
October 9, 2024 10:51 3m 13s