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Populate 'sample_public_name' column values with 'sanger_sample_id' column values for RVI-prefixed samples #4565

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Populate 'sample_public_name' column values with 'sanger_sample_id' column values for RVI-prefixed samples #4565

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populating sample_public_name with sanger_sample_id values for RVI Study
sabrine33 Dec 17, 2024
ddc7ce2
linting
sabrine33 Dec 17, 2024
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18 changes: 18 additions & 0 deletions db/migrate/20241217140910_update_sample_public_name_for_rvi_study.rb
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Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
# frozen_string_literal: true
class UpdateSamplePublicNameForRviStudy < ActiveRecord::Migration[7.0]
def change
ActiveRecord::Base.connection.execute('SET autocommit = 0')
ActiveRecord::Base.connection.execute(<<~SQLQUERY)

UPDATE sample_metadata
JOIN samples ON sample_metadata.sample_id = samples.id
JOIN study_samples ON sample_metadata.sample_id = study_samples.sample_id
JOIN studies ON study_samples.study_id = studies.id
SET sample_metadata.sample_public_name = samples.sanger_sample_id
WHERE studies.name = 'RVI Program - Bait Capture' AND sanger_sample_id LIKE 'RVI%';
SQLQUERY

ActiveRecord::Base.connection.execute('COMMIT')
ActiveRecord::Base.connection.execute('SET autocommit = 1')
end
end
2 changes: 1 addition & 1 deletion db/schema.rb
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Expand Up @@ -10,7 +10,7 @@
#
# It's strongly recommended that you check this file into your version control system.

ActiveRecord::Schema[7.0].define(version: 2024_11_06_103710) do
ActiveRecord::Schema[7.0].define(version: 2024_12_17_140910) do
create_table "aliquot_indices", id: :integer, charset: "utf8mb4", collation: "utf8mb4_unicode_ci", options: "ENGINE=InnoDB ROW_FORMAT=DYNAMIC", force: :cascade do |t|
t.integer "aliquot_id", null: false
t.integer "lane_id", null: false
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