Merge pull request #43 from JamesGlover/ss463_add_phenotype_column_to…

…_samples_table

Ss463 add phenotype column to samples table

db/migrate/20160621125538_add_phenotype_column_to_sample_table.rb

@@ -0,0 +1,7 @@
+class AddPhenotypeColumnToSampleTable < ActiveRecord::Migration
+  def change
+    change_table :sample do |t|
+      t.string   'phenotype', comment: 'The phenotype of the sample as described in Sequencescape'
+    end
+  end
+end

db/structure.sql

@@ -184,6 +184,7 @@ CREATE TABLE `sample` (
   `strain` varchar(255) COLLATE utf8_unicode_ci DEFAULT NULL,
   `consent_withdrawn` tinyint(1) NOT NULL DEFAULT '0',
   `donor_id` varchar(255) COLLATE utf8_unicode_ci DEFAULT NULL,
+  `phenotype` varchar(255) COLLATE utf8_unicode_ci DEFAULT NULL COMMENT 'The phenotype of the sample as described in Sequencescape',
   PRIMARY KEY (`id_sample_tmp`),
   UNIQUE KEY `index_sample_on_id_sample_lims_and_id_lims` (`id_sample_lims`,`id_lims`),
   UNIQUE KEY `sample_uuid_sample_lims_index` (`uuid_sample_lims`),
@@ -336,5 +337,7 @@ INSERT INTO schema_migrations (version) VALUES ('20160420084130');
 
 INSERT INTO schema_migrations (version) VALUES ('20160422095926');
 
+INSERT INTO schema_migrations (version) VALUES ('20160621125538');
+
 INSERT INTO schema_migrations (version) VALUES ('20160810093024');
 

spec/models/sample_spec.rb

@@ -33,6 +33,7 @@
         "name" => "name",
         "reference_genome" => "reference genome",
         "organism" => "organism",
+        "phenotype"=>"healthy",
         "consent_withdrawn" => true,
         "sample_ebi_accession_number" => "accession number",
         "sample_common_name" => "common name",