docs: 🚧 separate algorithm vignette, plus pseudocode for internals#163

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lwjohnst86 wants to merge 48 commits intomainfrom docs/design-into-algorithm-and-pseudocode

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Commits on Sep 18, 2024

Fleshed out and updated include_gld_purchases() flow documentation

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Added description of podiatrist services function flow

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Reformated some GLD text, added HbA1c and started on pregnancy dates

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Commits on Sep 19, 2024

Reworded include_hba1c section

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Added lpr-joins, started on describing lpr processing

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Finished LPR/diagnosis part of function flow

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fixed a new things to describe LPR3 processing

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specified that only primary diagnoses go into type classification

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Update vignettes/function-flow.Rmd

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switched the order of inclusion sections and mentioned that some of the inputs go to exclusion functions

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Merge branch 'update-function-flow' of https://github.com/steno-aarhus/osdc into update-function-flow

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Commits on Sep 20, 2024

Merge branch 'main' into update-function-flow
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fixed spec to speciale variable name

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Merge branch 'update-function-flow' of https://github.com/steno-aarhus/osdc into update-function-flow

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Removed "name" or "vnr" variables from GLD function flow.

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Updates join_lpr function description to filter to necessary diagnoses.

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Removed section on weightloss drugs, since we're no longer including drugs with a dual-use for weightloss.

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Update vignettes/function-flow.Rmd

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Added description of exclude_potential_pcos()

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Merge branch 'update-function-flow' of https://github.com/steno-aarhus/osdc into update-function-flow

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Renamed some variables.

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Added censoring/exclusion function description

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Commits on Sep 27, 2024

Added correct diagnoses to filter to in lpr_join() functions.

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changed specialty values to align with the PR with a refactored create_lpr2() function

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Commits on Dec 16, 2024

Joining inclusions and definition. Looking to add type classification.

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Commits on Dec 17, 2024

Removed helper function for dropping first event as it seemed a bit excessive.

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Added function flow description of get_diabetes_type() and its helper functions.

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Commits on Dec 18, 2024

Commits on Dec 19, 2024