Merge pull request #1208 from sys-bio/add-PT-docs

Add some documentation for the GetPiecewiseTriggersCodeGen class.
sys-bio · Mar 27, 2024 · 92d063b · 92d063b
2 parents 1a38325 + 8296add
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+<div class="title">GetPiecewiseTriggerCodeGen.h</div>  </div>
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+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment"> * GetPiecewiseTriggerCodeGen.h</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment"> *</span></div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment"> */</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160; </div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#ifndef RRLLVMGetPiecewiseTriggerCodeGen_H_</span></div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#define RRLLVMGetPiecewiseTriggerCodeGen_H_</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160; </div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="preprocessor">#include &quot;CodeGenBase.h&quot;</span></div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &quot;ModelGeneratorContext.h&quot;</span></div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="preprocessor">#include &quot;SymbolForest.h&quot;</span></div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="preprocessor">#include &quot;ASTNodeCodeGen.h&quot;</span></div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#include &quot;ASTNodeFactory.h&quot;</span></div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="preprocessor">#include &quot;ModelDataIRBuilder.h&quot;</span></div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#include &quot;ModelDataSymbolResolver.h&quot;</span></div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#include &quot;LLVMException.h&quot;</span></div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="preprocessor">#include &quot;rrLogger.h&quot;</span></div>
+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="preprocessor">#include &lt;sbml/Model.h&gt;</span></div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="preprocessor">#include &lt;Poco/Logger.h&gt;</span></div>
+<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="preprocessor">#include &lt;cstdio&gt;</span></div>
+<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160; </div>
+<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="keyword">namespace </span>rrllvm</div>
+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;{</div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;    <span class="comment">//Based on GetEventTriggerCodeGen (-LS)</span></div>
+<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160; </div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;    <span class="keyword">typedef</span> <span class="keywordtype">unsigned</span> char (*GetPiecewiseTriggerCodeGen_FunctionPtr)(LLVMModelData*, size_t);</div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160; </div>
+<div class="line"><a name="l00032"></a><span class="lineno"><a class="line" href="classrrllvm_1_1GetPiecewiseTriggerCodeGen.html">   32</a></span>&#160;    <span class="keyword">class </span><a class="code" href="classrrllvm_1_1GetPiecewiseTriggerCodeGen.html">GetPiecewiseTriggerCodeGen</a> :</div>
+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;        <span class="keyword">public</span> <a class="code" href="classrrllvm_1_1CodeGenBase.html">CodeGenBase</a>&lt;GetPiecewiseTriggerCodeGen_FunctionPtr&gt;</div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;    {</div>
+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;    <span class="keyword">public</span>:</div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;        <a class="code" href="classrrllvm_1_1GetPiecewiseTriggerCodeGen.html">GetPiecewiseTriggerCodeGen</a>(<span class="keyword">const</span> <a class="code" href="classrrllvm_1_1ModelGeneratorContext.html">ModelGeneratorContext</a>&amp; mgc);</div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;        <span class="keyword">virtual</span> ~<a class="code" href="classrrllvm_1_1GetPiecewiseTriggerCodeGen.html">GetPiecewiseTriggerCodeGen</a>() {};</div>
+<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160; </div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;        llvm::Value* <a class="code" href="classrrllvm_1_1GetPiecewiseTriggerCodeGen.html#abd60003c2ef224226f4cc1799f5fbb35">codeGen</a>();</div>
+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160; </div>
+<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;        <span class="keyword">typedef</span> GetPiecewiseTriggerCodeGen_FunctionPtr FunctionPtr;</div>
+<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160; </div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;        <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span>* FunctionName;</div>
+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;        <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span>* IndexArgName;</div>
+<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160; </div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;        llvm::Type* <a class="code" href="classrrllvm_1_1GetPiecewiseTriggerCodeGen.html#a33342e6171e484cbdbccec15ad011d64">getRetType</a>();</div>
+<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160; </div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;        llvm::Value* <a class="code" href="classrrllvm_1_1GetPiecewiseTriggerCodeGen.html#a2b6a29ab3b46c75c3465ac8da143ce14">createRet</a>(llvm::Value*);</div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160; </div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;    <span class="keyword">private</span>:</div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;        <span class="keyword">const</span> std::vector&lt;libsbml::ASTNode*&gt;* piecewiseTriggers;</div>
+<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;    };</div>
+<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160; </div>
+<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160; </div>
+<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;} <span class="comment">/* namespace rr */</span></div>
+<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160; </div>
+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160; </div>
+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160; </div>
+<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160; </div>
+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/* RRLLVMGETVALUECODEGENBASE_H_ */</span><span class="preprocessor"></span></div>
+<div class="ttc" id="aclassrrllvm_1_1CodeGenBase_html"><div class="ttname"><a href="classrrllvm_1_1CodeGenBase.html">rrllvm::CodeGenBase</a></div><div class="ttdoc">a convenience class to pull the vars out of a context, and store them as ivars.</div><div class="ttdef"><b>Definition:</b> CodeGenBase.h:54</div></div>
+<div class="ttc" id="aclassrrllvm_1_1GetPiecewiseTriggerCodeGen_html"><div class="ttname"><a href="classrrllvm_1_1GetPiecewiseTriggerCodeGen.html">rrllvm::GetPiecewiseTriggerCodeGen</a></div><div class="ttdoc">Class for getting piecewise trigger values.</div><div class="ttdef"><b>Definition:</b> GetPiecewiseTriggerCodeGen.h:34</div></div>
+<div class="ttc" id="aclassrrllvm_1_1GetPiecewiseTriggerCodeGen_html_a2b6a29ab3b46c75c3465ac8da143ce14"><div class="ttname"><a href="classrrllvm_1_1GetPiecewiseTriggerCodeGen.html#a2b6a29ab3b46c75c3465ac8da143ce14">rrllvm::GetPiecewiseTriggerCodeGen::createRet</a></div><div class="ttdeci">llvm::Value * createRet(llvm::Value *)</div><div class="ttdoc">create a return type, a zero value should return the default type</div><div class="ttdef"><b>Definition:</b> GetPiecewiseTriggerCodeGen.cpp:90</div></div>
+<div class="ttc" id="aclassrrllvm_1_1GetPiecewiseTriggerCodeGen_html_a33342e6171e484cbdbccec15ad011d64"><div class="ttname"><a href="classrrllvm_1_1GetPiecewiseTriggerCodeGen.html#a33342e6171e484cbdbccec15ad011d64">rrllvm::GetPiecewiseTriggerCodeGen::getRetType</a></div><div class="ttdeci">llvm::Type * getRetType()</div><div class="ttdoc">The ret type is a boolean, aka 'getInt8Ty'.</div><div class="ttdef"><b>Definition:</b> GetPiecewiseTriggerCodeGen.cpp:85</div></div>
+<div class="ttc" id="aclassrrllvm_1_1GetPiecewiseTriggerCodeGen_html_abd60003c2ef224226f4cc1799f5fbb35"><div class="ttname"><a href="classrrllvm_1_1GetPiecewiseTriggerCodeGen.html#abd60003c2ef224226f4cc1799f5fbb35">rrllvm::GetPiecewiseTriggerCodeGen::codeGen</a></div><div class="ttdeci">llvm::Value * codeGen()</div><div class="ttdoc">The heart of the class, that creates code blocks for every piecewise trigger in the model.</div><div class="ttdef"><b>Definition:</b> GetPiecewiseTriggerCodeGen.cpp:29</div></div>
+<div class="ttc" id="aclassrrllvm_1_1ModelGeneratorContext_html"><div class="ttname"><a href="classrrllvm_1_1ModelGeneratorContext.html">rrllvm::ModelGeneratorContext</a></div><div class="ttdoc">All LLVM code generating objects basically need at a minimum three things to operate:</div><div class="ttdef"><b>Definition:</b> ModelGeneratorContext.h:95</div></div>
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@@ -195,7 +195,7 @@
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+<tr id="row_1_31_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classrrllvm_1_1GetPiecewiseTriggerCodeGen.html" target="_self">GetPiecewiseTriggerCodeGen</a></td><td class="desc">Class for getting piecewise trigger values </td></tr>
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