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theiagen / public_health_bioinformatics Public

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[Merlin_magic; Sonneityping] harden workflow against failures due to sonnei typing disagreement#747

Merged

sage-wright merged 4 commits intomaintheiagen/public_health_bioinformatics:mainfrom awh-merlinmagic-devtheiagen/public_health_bioinformatics:awh-merlinmagic-devCopy head branch name to clipboard

Feb 7, 2025

+40-24

Conversation Commits4 (4)Checks Files changed

Commits

Commits on Feb 4, 2025

New docker image with newest parser commit; failure handling if the output is not produced but mykrobe runs to completion; debug messages added
awh082834
committed
md5sum changes
awh082834
committed

Commits on Feb 7, 2025

staphb image included; staphb/mykrobe:0.12.1-sonneityping
awh082834
committed
md5sum update
awh082834
committed

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