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Apply max height splay method #989

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@m4ushold m4ushold commented Sep 1, 2024

What this PR does / why we need it:
This PR aims to address the performance and efficiency degradation in the crdt.Text data structure caused by skewness in the Splay tree. Splay trees, while efficient for operations over continuous ranges, have the downside that consecutively inserted elements may become linearly arranged, leading to a skewed tree.
When performing M operations on a tree with N nodes, the overall performance is generally guaranteed to be O((N+M) log N). However, if the tree becomes skewed, each operation might initially take O(N) time, though this could eventually improve. Such skewness can degrade the performance of the crdt.Text data structure, making it critical to explore ways to prevent this skewness and maintain the tree's efficiency.

This PR introduces a new method called MaxHeightSplay, which mitigates the skewing of the tree by controlling the upper bound of the tree height while preserving the characteristics of the Splay tree. MaxHeightSplay works by identifying the deepest node and performing a splay operation to reduce the tree's height.
During each operation (insert, delete, find, etc.) on the Splay tree, if the number of nodes n exceeds 1000 and the tree height exceeds 50*log n, MaxHeightSplay is invoked. Although this is a simple heuristic, experimental results show that during 260,000 operations, the total number of rotations performed (sum.rot) increased by 1.150 times, while the maximum number of rotations performed during any individual operation (mx.rot) decreased by 0.151 times. The experimental code can be found here.
Moreover, it is believed that no further performance improvements are necessary; attempting more aggressive balancing could compromise the inherent characteristics of the Splay tree.

In the previous PR, calculating the balance on every splay operation led to issues such as stack overflow. In this PR, the issue has been resolved by invoking MaxHeightSplay during each operation on the Splay tree.

Which issue(s) this PR fixes:

Address #941

Special notes for your reviewer:

Does this PR introduce a user-facing change?:


Additional documentation:


Checklist:

  • Added relevant tests or not required
  • Didn't break anything

Summary by CodeRabbit

Summary by CodeRabbit

  • New Features

    • Enhanced functionality of the splay tree with improved balancing and node property management.
    • Added height tracking for nodes in the splay tree, allowing for better performance and accuracy in operations.
    • Introduced command-line commands for user account management, including changing passwords and deleting accounts.
  • Bug Fixes

    • Updated expected output in test cases to align with new string representations of nodes and arrays, ensuring accurate validation of functionality.
  • Tests

    • Modified test cases for both document and splay tree structures to reflect changes in output formatting and internal logic.
    • Added benchmarking functions for evaluating performance of splay tree operations.

To prevent the tree from becoming skewed, we applied a heuristic cal-
led the 'max height splay' method. When the size of the tree is n,
and its height exceeds 50*(log n), the deepest node is selected and
splayed to the root. To avoid excessive balancing when the tree has
few nodes, the balancing process is skipped if the number of nodes is
1000 or fewer.
Since the 'max height splay' method requires knowledge of the tree's
height, we added a height attribute to the nodes of the splay tree
and included code to check the height during testing.
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coderabbitai bot commented Sep 1, 2024

Walkthrough

The changes involve updates to the Node and Tree structures in the splay tree implementation, enhancing their functionality by adding new fields and methods. Test cases for the ToTestString() method across various files have been modified to reflect new expected outputs, ensuring alignment with the updated internal logic. Additionally, benchmark tests for the Document structure have been adjusted to account for changes in string representation. User account management functionalities have been introduced in the CLI, including methods for deleting accounts and changing passwords.

Changes

Files Change Summary
pkg/document/document_test.go, test/bench/document_bench_test.go Updated expected output strings in test cases for ToTestString() method to reflect new values.
pkg/splay/splay.go Modified Node and Tree structures to include new fields and methods for improved functionality.
pkg/splay/splay_test.go Adjusted expected output strings in TestSplayTree to include additional numerical values.
admin/client.go Added methods for deleting accounts and changing passwords in the Client struct.
cmd/yorkie/commands.go, cmd/yorkie/user/*.go Introduced new CLI commands for user management, including account deletion and password changes.
go.mod Updated dependencies to enhance YAML handling and system call compatibility.
test/bench/tree_editing_bench_test.go Added benchmarking functions for splay tree operations, evaluating performance under dynamic edits.

Possibly related issues

Possibly related PRs

Suggested labels

enhancement 🌟

🐇 Hopping through the code, oh what a sight,
With trees standing tall, everything feels right!
Heights and counts, they dance in delight,
New tests to ensure that all is just right.
In the splay of the night, we’ll take flight! 🌙✨


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Actionable comments posted: 0

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 3f4f5d3 and e6eb7fc.

Files selected for processing (4)
  • pkg/document/document_test.go (1 hunks)
  • pkg/splay/splay.go (14 hunks)
  • pkg/splay/splay_test.go (5 hunks)
  • test/bench/document_bench_test.go (1 hunks)
Additional comments not posted (23)
pkg/splay/splay_test.go (4)

59-59: Expected output format of ToTestString() has changed.

The expected output of tree.ToTestString() now includes an additional numerical value, likely representing the height or depth of the node in the tree.


61-61: Consistent change in the expected output format of ToTestString().

The expected outputs of tree.ToTestString() consistently include an additional numerical value for each node, likely representing the height or depth of the node in the tree.

Also applies to: 63-63, 65-65


68-68: Consistent change in the expected output format of ToTestString() after splaying.

The expected output of tree.ToTestString() includes the additional numerical value for each node, even after splaying nodeB, which is consistent with the previous observations.


95-95: Consistent change in the expected output format of ToTestString() after various operations.

The expected outputs of tree.ToTestString() consistently include the additional numerical value for each node, even after various insertion and deletion operations, which is consistent with the previous observations.

Also applies to: 98-98, 101-101, 104-104, 108-108

test/bench/document_bench_test.go (3)

145-145: Verify if the changes to the expected output of ToTestString() are intentional and correct.

The expected output strings for the array's ToTestString() method have been updated to include additional elements and indices. Please ensure that these changes align with the intended behavior and the updates made to the ToTestString() method.

To verify the correctness of the changes, please provide more context on the updates made to the ToTestString() method and confirm if the new expected output strings match the desired behavior. If possible, share the relevant code changes made to the ToTestString() method.

Also applies to: 150-150, 155-155, 160-160


145-160: Skipped review

The benchmarkTreeDeleteAll function was not part of the changed code segment. Skipping the review for this function.


145-160: Skipped review

The benchmarkTreeEditGC function was not part of the changed code segment. Skipping the review for this function.

pkg/splay/splay.go (12)

39-39: LGTM!

The addition of the height field to the Node struct is approved. It enables tracking the height of each node, which is essential for maintaining the balance of the tree.


49-50: LGTM!

Initializing the height field to 1 in the NewNode function is approved. It correctly sets the height of a new node to 1.


75-80: LGTM!

The implementation of the leftHeight method is approved. It correctly retrieves the height of the left child node, returning 0 if the left child is nil.


82-87: LGTM!

The implementation of the rightHeight method is approved. It correctly retrieves the height of the right child node, returning 0 if the right child is nil.


111-112: LGTM!

The addition of the nodeCount field to the Tree struct is approved. It enables tracking the total number of nodes in the tree, which is essential for the new balancing mechanism.


118-119: LGTM!

Initializing the nodeCount field to 0 in the NewTree function is approved. It correctly sets the node count of a new tree to 0.


Line range hint 135-150: LGTM!

The changes to the InsertAfter method are approved:

  • Calling the BalancingTreeHeight method before splaying ensures that the tree remains balanced after inserting a new node.
  • Updating both the height and weight of nodes using the UpdateNode method maintains the consistency of node properties.
  • Incrementing the nodeCount after inserting a new node keeps track of the total number of nodes in the tree.

152-156: LGTM!

The implementation of the UpdateNode method is approved. It correctly recalculates the height and weight of a node with the value and children, streamlining the maintenance of node properties.


158-168: LGTM!

The implementation of the MaxHeightSplay method is approved. It correctly finds a deepest node by traversing down the tree based on the height of child nodes and splays the found node to the root, helping to restructure the tree and promote balance.


226-226: LGTM!

Calling the BalancingTreeHeight method before finding the index of a node in the IndexOf method is approved. It ensures that the tree remains balanced during the operation.


246-246: LGTM!

Calling the BalancingTreeHeight method before finding a node at a given index in the Find method is approved. It ensures that the tree remains balanced during the operation.


Line range hint 348-377: LGTM!

The changes to the Delete method are approved:

  • Calling the BalancingTreeHeight method before deleting a node ensures that the tree remains balanced during the operation.
  • Updating both the height and weight of the root node using the UpdateNode method after deletion maintains the consistency of node properties.
  • Decrementing the nodeCount after deleting a node keeps track of the total number of nodes in the tree.
pkg/document/document_test.go (4)

135-135: LGTM!

The update to the expected output string in the assertion for root.GetArray("k1").ToTestString() is approved. It reflects the inclusion of height information in the array's string representation, aligning with the modifications made to the internal structure of the array.


140-140: LGTM!

The update to the expected output string in the assertion for root.GetArray("k1").ToTestString() after deleting an element is approved. It reflects the inclusion of height information in the array's string representation, aligning with the modifications made to the internal structure of the array.


145-145: LGTM!

The update to the expected output string in the assertion for root.GetArray("k1").ToTestString() after inserting an element is approved. It reflects the inclusion of height information in the array's string representation, aligning with the modifications made to the internal structure of the array.


150-150: LGTM!

The update to the expected output string in the assertion for root.GetArray("k1").ToTestString() after inserting another element is approved. It reflects the inclusion of height information in the array's string representation, aligning with the modifications made to the internal structure of the array.

@hackerwins
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hackerwins commented Sep 3, 2024

Related to #989

…#983)

Added functionality allowing users to delete accounts and change passwords through the CLI to support recent development of admin ChangePassword and DeleteAccount APIs on the server side.
@m4ushold
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m4ushold commented Sep 3, 2024

Do you mean #957?
Should I close this and continue from there?

@hackerwins
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@m4ushold Sorry. I wrote the wrong reference by mistake. I wanted to link this issue with #980.

Add benchmark tests to see how much performance optimization improves
the splay tree.
Fixed an issue where the delete operation attempted to remove nodes
outside the valid range. The index range is now progressively
narrowed during the operation.
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Actionable comments posted: 0

Outside diff range and nitpick comments (2)
admin/client.go (2)

381-392: LGTM! Ensure proper checks and cleanup.

The DeleteAccount function looks good and follows the existing code style. However, please ensure the following:

  1. Proper authentication and authorization checks are in place before allowing account deletion.
  2. Cascading effects of account deletion are handled, such as cleaning up associated data or resources.

394-406: LGTM! Ensure password validation and secure storage.

The ChangePassword function looks good and follows the existing code style. However, please ensure the following:

  1. Proper validation is in place for the new password, such as checking for minimum length, complexity, etc.
  2. The old password is correctly verified before allowing the change.
  3. Secure practices are followed, such as hashing and salting passwords before storage.
Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between e6eb7fc and d07df28.

Files ignored due to path filters (1)
  • go.sum is excluded by !**/*.sum
Files selected for processing (9)
  • admin/client.go (1 hunks)
  • cmd/yorkie/commands.go (2 hunks)
  • cmd/yorkie/user/change_password.go (1 hunks)
  • cmd/yorkie/user/delete_account.go (1 hunks)
  • cmd/yorkie/user/login.go (4 hunks)
  • cmd/yorkie/user/logout.go (2 hunks)
  • cmd/yorkie/user/user.go (1 hunks)
  • go.mod (2 hunks)
  • test/bench/tree_editing_bench_test.go (1 hunks)
Additional comments not posted (32)
cmd/yorkie/user/user.go (4)

1-15: LGTM!

The copyright notice and license information are properly formatted and attributed. The Apache License 2.0 is a widely used open-source license that provides clear terms and conditions for using, modifying, and distributing the code.


17-18: LGTM!

The package declaration and the accompanying comment are clear and descriptive. The package name "user" aligns with the functionality it provides, and the comment succinctly explains the purpose of the package.


20-20: LGTM!

The import statement for the Cobra library is properly formatted and aligns with the package's purpose of providing a CLI command. Cobra is a widely used and well-maintained library for building CLI applications in Go, making it a suitable choice for this package.


22-28: LGTM!

The SubCmd variable declaration is properly formatted and follows Go's naming conventions. The usage string and short description provide clear information about the command's purpose and how to invoke it. This variable serves as the foundation for the user command and can be further extended with additional subcommands and functionalities related to user account management.

cmd/yorkie/user/logout.go (2)

17-17: Package change looks good.

The package has been changed from main to user, which aligns with the goal of better encapsulating user-related functionalities within the codebase. This change should improve code organization and clarity.


71-71: Verify the impact of the command registration change.

The command registration has been altered from adding the command to rootCmd to adding it to SubCmd. While this change suggests a reorganization of command hierarchies, it's important to ensure that the logout command is still accessible and functioning as expected from the CLI.

Run the following script to verify the command registration change:

Verification successful

Verification of command registration change confirmed

The command registration change has been correctly implemented. The logout command is now registered under the user subcommand (SubCmd), which is then added to the root command. This change is consistent with other user-related commands and follows a clear pattern for better organization of the CLI structure.

Key points:

  • The logout command is added to SubCmd in the init() function of cmd/yorkie/user/logout.go.
  • Other user-related commands (login, delete_account, change_password) follow the same pattern.
  • The user.SubCmd is added to rootCmd in cmd/yorkie/commands.go.

This new structure allows for a more organized and hierarchical command layout, improving the overall user experience of the CLI.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the `logout` command is accessible and functioning as expected from the CLI.

# Test 1: Check if the `logout` command is accessible under the `user` subcommand.
# Expect: The `logout` command should be listed in the help output.
yorkie user --help

# Test 2: Attempt to log out using the `logout` command.
# Expect: The command should execute successfully and log out the user.
yorkie user logout

# Test 3: Verify that the user is logged out by attempting to perform an operation that requires authentication.
# Expect: The operation should fail due to the user being logged out.
yorkie document list

Length of output: 288


Script:

#!/bin/bash

# Find relevant files in the cmd directory
echo "Relevant files in cmd directory:"
fd . cmd

# Search for SubCmd definition
echo -e "\nSubCmd definition:"
ast-grep --lang go --pattern 'var SubCmd = &cobra.Command{$$$}'

# Search for commands registered under SubCmd
echo -e "\nCommands registered under SubCmd:"
ast-grep --lang go --pattern 'SubCmd.AddCommand($_)'

# Search for any remaining references to rootCmd related to logout
echo -e "\nReferences to rootCmd related to logout:"
rg 'rootCmd.*logout' cmd

Length of output: 1171


Script:

#!/bin/bash

# Search for Command definitions in the user package
echo "Command definitions in user package:"
ast-grep --lang go --pattern 'var $_ = &cobra.Command{$$$}' cmd/yorkie/user/

# Look for AddCommand calls in the user package
echo -e "\nAddCommand calls in user package:"
ast-grep --lang go --pattern '$_.AddCommand($_)' cmd/yorkie/user/

# Check the content of cmd/yorkie/user/user.go
echo -e "\nContent of cmd/yorkie/user/user.go:"
cat cmd/yorkie/user/user.go

# Search for cobra.Command usage in logout.go
echo -e "\ncobra.Command usage in logout.go:"
ast-grep --lang go --pattern 'cobra.Command{$$$}' cmd/yorkie/user/logout.go

Length of output: 2879


Script:

#!/bin/bash

# Search for imports of the "cmd/yorkie/user" package
echo "Imports of cmd/yorkie/user package:"
rg 'import.*".*cmd/yorkie/user"' cmd

# Look for functions that might be initializing commands
echo -e "\nFunctions initializing commands:"
ast-grep --lang go --pattern 'func $_() {
  $$$
  SubCmd.AddCommand($_)
  $$$
}'

# Check for AddCommand calls related to user or logout commands
echo -e "\nAddCommand calls related to user or logout:"
rg 'AddCommand.*user|AddCommand.*logout' cmd

Length of output: 8120

cmd/yorkie/commands.go (2)

30-30: LGTM!

The import statement for the user package is syntactically correct and follows the expected import path pattern for the Yorkie project.

Based on the AI-generated summary, this import is part of the effort to introduce user management functionality to the Yorkie command-line interface. The user package is expected to contain the necessary code for implementing user-related operations.


53-53: Looks good!

The addition of user.SubCmd to the rootCmd is syntactically correct and follows the established pattern for registering subcommands in the Yorkie command-line interface.

According to the AI-generated summary, this change is part of the effort to introduce user management functionality to the Yorkie CLI. By adding the user subcommand, users will be able to perform operations related to user management directly from the command line, enhancing the overall capabilities and usability of the Yorkie tool.

cmd/yorkie/user/login.go (5)

17-18: LGTM!

The package name change from main to user is appropriate, as it aligns with the purpose of the file to provide user-related commands.


22-23: LGTM!

The fmt and os package imports are necessary for the new password input functionality, such as printing messages and reading from the standard input.


26-26: LGTM!

The golang.org/x/term package import is necessary for the new password input functionality, as it provides functions for reading password input securely without echoing the characters.


45-52: LGTM!

The code enhances security by prompting the user for a password and reading it securely using term.ReadPassword function. The password is read from the standard input, and error handling is performed to ensure successful password reading. The password is then stored in the password variable for further use.


Line range hint 96-111: LGTM!

Marking the username flag as required ensures that the user provides a username when running the command, which aligns with the updated login functionality. Adding the command to SubCmd instead of rootCmd indicates a change in the command structure within the application, which is appropriate for the user-related commands.

cmd/yorkie/user/change_password.go (4)

36-71: LGTM!

The changePasswordCmd function is well-structured and follows the Cobra command pattern. It properly handles errors and cleans up resources using defer. The main logic for changing the password is encapsulated in the RunE function, which retrieves passwords, establishes a connection to the admin service, changes the password, and deletes the authentication session.


73-91: LGTM!

The getPasswords function correctly prompts the user to enter their current and new passwords securely using term.ReadPassword. It handles errors appropriately and returns the passwords as strings, which is suitable for the use case.


93-105: LGTM!

The deleteAuthSession function correctly deletes the authentication session associated with the given rpcAddr. It loads the configuration, deletes the authentication entry, and saves the updated configuration. Error handling is performed appropriately for both loading and saving the configuration.


107-130: LGTM!

The init function correctly initializes the change-password command and sets up its flags. It creates the command using changePasswordCmd(), sets up flags for username, RPC address, and insecure connection option. The username flag is appropriately marked as required. The command is properly added to the SubCmd using SubCmd.AddCommand().

go.mod (3)

30-30: Verify compatibility and update YAML handling code.

The addition of gopkg.in/yaml.v3 at version v3.0.1 is a significant change that could enhance YAML handling capabilities within the project. Please ensure that:

  1. The new dependency is compatible with the existing codebase and doesn't introduce any breaking changes.
  2. The relevant code that handles YAML is updated to leverage the new features or APIs provided by this dependency.

76-76: Thoroughly test the codebase with the updated dependency.

The update of golang.org/x/sys from v0.15.0 to v0.23.0 could bring improvements in system call handling or compatibility with newer Go features. However, it's essential to thoroughly test the codebase to ensure that the update doesn't break any existing functionality.

Please perform comprehensive testing and verify that all system call-related operations work as expected with the updated version.


77-77: Verify compatibility and update terminal handling code.

The addition of golang.org/x/term at version v0.23.0 could provide additional terminal handling functionalities. Please ensure that:

  1. The new dependency is compatible with the existing codebase and doesn't introduce any breaking changes.
  2. The relevant code that interacts with terminals is updated to leverage the new features or APIs provided by this dependency, such as reading password input, controlling terminal modes, etc.
test/bench/tree_editing_bench_test.go (7)

36-39: LGTM!

The stringValue struct is well-defined with appropriate fields and access modifiers for internal usage within the package.


41-45: LGTM!

The newSplayNode function is a helpful utility for creating new splay tree nodes with the given string content. It encapsulates the node creation logic and improves code readability.


47-52: LGTM!

The Len method correctly returns the length of the string content stored in the stringValue instance, considering the removed flag. It provides a way to determine the length of the value stored in the splay tree node.


54-56: LGTM!

The String method correctly returns the string representation of the stringValue instance by returning the content field. It satisfies the fmt.Stringer interface, enabling the instance to be printed or formatted as a string.


58-64: LGTM!

The buildSplayTree function correctly constructs a splay tree with the specified number of nodes. It creates a new empty tree and iteratively inserts nodes with the string "a" using the newSplayNode function. The function provides a convenient way to build a splay tree for testing purposes.


66-101: LGTM!

The BenchmarkSplayTree function provides comprehensive benchmarks for evaluating the performance of insertion, random reads, and deletions on the splay tree. It defines sub-benchmarks for different tree sizes and measures the time taken for each operation using the testing.B framework. The benchmarks cover the critical operations and provide valuable insights into the performance characteristics of the splay tree implementation.


102-129: LGTM!

The benchmark function for editing the splay tree based on an editing trace is well-implemented. It reads the editing trace from a file, creates a new empty splay tree, and performs insertions or deletions based on the edit mode. The benchmark provides a realistic scenario for evaluating the performance of the splay tree under dynamic editing conditions. It measures the time taken to perform the edits, giving valuable insights into the efficiency of the splay tree implementation in handling real-world editing scenarios.

cmd/yorkie/user/delete_account.go (5)

33-70: LGTM!

The deleteAccountCmd function is well-structured and handles the account deletion flow correctly. It prompts the user for a password and confirmation, loads the configuration, and attempts to delete the account from the server. The function provides appropriate feedback to the user based on the success or failure of the account deletion.


72-82: LGTM!

The getPassword function correctly prompts the user for a password and returns it as a string. It handles errors from the term.ReadPassword function and converts the password from a byte slice to a string before returning it.


84-100: LGTM!

The makeConfirmation function correctly prompts the user to type 'DELETE' to confirm the account deletion. It handles errors from the fmt.Scanln function and returns false if the user enters anything other than 'DELETE'.


102-132: LGTM!

The deleteAccountFromServer function correctly attempts to delete the user account from the server. It dials the admin client using the provided RPC address and authentication token, sets a timeout of 30 seconds for the account deletion operation, and calls the DeleteAccount method on the admin client with the provided username and password. The function handles errors from the DeleteAccount method and updates the configuration to remove the account details and save the changes.


134-157: LGTM!

The init function correctly initializes the delete-account command and adds it to the SubCmd command. It adds the required username flag and optional rpc-addr and insecure flags to the command, marks the username flag as required, and adds the delete-account command to the SubCmd command.

@hackerwins
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Adding both weight and height to each node increases memory usage, and the cost of re-computation becomes higher. Additionally, when splaying based on height, it seems that more splay operations are performed than anticipated. Therefore, @m4ushold and I have decided to close this PR for now.

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