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fixes for loading chain that crashed on write #378

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merged 4 commits into from
Aug 23, 2024

fix

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Merged

fixes for loading chain that crashed on write #378

fix
4f7ad49
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Travis CI / Travis CI - Branch succeeded Aug 22, 2024 in 8m 32s

Build Passed

The build passed. This is a change from the previous build, which canceled.

Details

This is a normal build for the test_trunc branch. You should be able to reproduce it by checking out the branch locally.

Jobs and Stages

This build only has a single job.
You can use jobs to test against multiple versions of your runtime or dependencies, or to speed up your build.

Build Configuration

Build Option Setting
Language Python
Operating System Linux (Xenial)
Build Configuration
{
  "language": "python",
  "os": [
    "linux"
  ],
  "dist": "xenial",
  "git": {
    "depth": false
  },
  "env": [
    "global={:COBAYA_INSTALL_SKIP=>\"polychord,planck_2015,CamSpec2021,2018_highl_CamSpec,unbinned,keck\"}"
  ],
  "if": "(type = pull_request) OR (branch = master) OR (branch =~ ^test.*) OR (branch =~ ^alltest.*) OR (tag IS present)",
  "cache": {
    "directories": [
      "/home/travis/build/CosmoPars/packages/code",
      "/home/travis/build/CosmoPars/packages/data/planck_supp_data_and_covmats",
      "/home/travis/build/CosmoPars/packages/data/planck_2018/baseline",
      "/home/travis/build/CosmoPars/packages/data/bicep_keck_2018",
      "/home/travis/build/CosmoPars/packages/data/bao_data",
      "/home/travis/build/CosmoPars/packages/data/sn_data",
      "/home/travis/build/CosmoPars/packages/data/des_data",
      "/home/travis/build/CosmoPars/packages/data/planck_2018_pliklite_native"
    ]
  },
  "jobs": {
    "include": [
      {
        "if": "branch !~ ^test.*",
        "dist": "focal",
        "name": "Minimum requisites for dependencies: gcc-7, Python 3.8",
        "addons": {
          "apt": {
            "packages": [
              "gcc-7",
              "g++-7",
              "gfortran-7"
            ]
          }
        },
        "env": [
          {
            "GCC_VERSION": "\"7\""
          }
        ],
        "python": "3.8"
      },
      {
        "if": "branch !~ ^test.*",
        "name": "Typical scenario: latest Ubuntu LTS",
        "dist": "jammy",
        "addons": {
          "apt": {
            "packages": [
              "gfortran"
            ]
          }
        },
        "install": [
          "pip install -r requirements.txt camb"
        ],
        "env": [
          {
            "GCC_VERSION": "\"ubuntu\""
          }
        ],
        "python": "3.10"
      },
      {
        "name": "Anaconda: jammy LTS Python (fast; pip CAMB)",
        "dist": "jammy",
        "env": [
          {
            "GCC_VERSION": "\"ubuntu\""
          },
          {
            "PYDIST": "\"ANACONDA\""
          },
          {
            "ANACONDA_CHANNEL": "\"defaults\""
          },
          {
            "COBAYA_INSTALL_SKIP": "\"$COBAYA_INSTALL_SKIP,classy\""
          }
        ],
        "language": "shell"
      },
      {
        "if": "branch !~ ^test.*",
        "name": "Latest jammy Python 3.12",
        "dist": "jammy",
        "addons": {
          "apt": {
            "packages": [
              "gfortran"
            ]
          }
        },
        "env": [
          {
            "GCC_VERSION": "\"ubuntu\""
          },
          {
            "COBAYA_INSTALL_SKIP": "\"$COBAYA_INSTALL_SKIP,classy\""
          }
        ],
        "python": "3.12"
      }
    ]
  },
  "before_install": [
    "if [[ \"$GCC_VERSION\" != \"ubuntu\" ]]; then mkdir -p gcc-symlinks; ln -s /usr/bin/gfortran-$GCC_VERSION gcc-symlinks/gfortran; ln -s /usr/bin/gcc-$GCC_VERSION gcc-symlinks/gcc; ln -s /usr/bin/g++-$GCC_VERSION gcc-symlinks/g++; export PATH=$PWD/gcc-symlinks:$PATH; fi",
    "which gfortran >/dev/null 2>&1 && gfortran --version || echo \"gfortran not installed\"",
    "if [[ \"$PYDIST\" == \"ANACONDA\" ]]; then wget -q https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; bash miniconda.sh -b -p $HOME/miniconda; export PATH=\"$HOME/miniconda/bin:$PATH\"; hash -r; conda config --set always_yes yes --set changeps1 no; conda info -a; conda create -q -n test-environment -c $ANACONDA_CHANNEL scipy matplotlib cython PyYAML dill coverage pytest pandas; source activate test-environment; conda install -c conda-forge mpi4py openmpi iminuit; pip install -r requirements.txt flake8 flaky pytest-xdist pytest-cov camb; else python -m pip install --upgrade pip setuptools wheel; pip install openmpi mpi4py -i https://pypi.anaconda.org/mpi4py/simple; pip install pytest-xdist pytest-cov flaky matplotlib dill coverage flake8 iminuit numba; fi",
    "python --version"
  ],
  "script": [
    "flake8 cobaya --select=E713,E704,E703,E714,E741,E10,E11,E20,E22,E23,E25,E27,E301,E302,E304,E9,F405,F406,F5,F6,F7,F8,W1,W2,W3,W6 --show-source --statistics",
    "export COBAYA_PACKAGES_PATH=\"../packages\"",
    "coverage run --parallel-mode -m cobaya.install polychord --debug",
    "coverage run --parallel-mode -m pytest tests/ -n auto -k \"not cosmo\" --skip-not-installed --no-flaky-report",
    "coverage run --parallel-mode -m cobaya.install cosmo-tests --no-progress-bars --debug --skip-global",
    "if [ -n \"${CAMB_BRANCH}\" ]; then rm -rf $COBAYA_PACKAGES_PATH/code/CAMB ; git clone --recursive --depth 1 -b $CAMB_BRANCH https://github.com/cmbant/CAMB $COBAYA_PACKAGES_PATH/code/CAMB ; python $COBAYA_PACKAGES_PATH/code/CAMB/setup.py build ; fi",
    "mpiexec -np 2 --mca orte_base_help_aggregate 0 --mca btl ^openib --oversubscribe coverage run --parallel-mode -m pytest -x -m mpi tests/ --no-flaky-report ;",
    "mkdir covers; mv .coverage.* covers; ls -ltra covers",
    "pytest tests/ --cov -vv -s -k \"cosmo\" -n 1 --skip-not-installed --no-flaky-report",
    "mv .coverage .coverage.pytest; mv covers/.cov* .",
    "git clone --depth=1 https://github.com/CobayaSampler/example_external_likelihood",
    "pip install ./example_external_likelihood --quiet",
    "coverage run --parallel-mode -m unittest test_package.tests.test"
  ],
  "after_success": [
    "bash <(curl -s https://codecov.io/bash)"
  ],
  "deploy": [
    {
      "provider": "pypi",
      "on": {
        "tags": true,
        "python": "3.10",
        "branch": [
          "master"
        ],
        "repo": "CobayaSampler/cobaya"
      },
      "edge": true,
      "username": "__token__",
      "password": {
        "secure": "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"
      }
    }
  ],
  "notifications": {
    "email": [
      {
        "recipients": [
          {
            "secure": "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"
          }
        ]
      }
    ]
  }
}