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fixes for loading chain that crashed on write #378

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merged 4 commits into from
Aug 23, 2024

fix

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Merged

fixes for loading chain that crashed on write #378

fix
4f7ad49
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Travis CI / Travis CI - Pull Request succeeded Aug 22, 2024 in 13m 43s

Build Passed

The build passed, just like the previous build.

Details

This is a pull request build.

It is running a build against the merge commit, after merging #378 fixes for loading chain than crashed on write.
Any changes that have been made to the master branch before the build ran are also included.

Jobs and Stages

This build has four jobs, running in parallel.

Job Python ENV OS State
2705.1 Minimum requisites for dependencies: gcc-7, Python 3.8 3.8 COBAYA_INSTALL_SKIP=polychord,planck_2015,CamSpec2021,2018_highl_CamSpec,unbinned,keck Linux passed
2705.2 Typical scenario: latest Ubuntu LTS 3.10 COBAYA_INSTALL_SKIP=polychord,planck_2015,CamSpec2021,2018_highl_CamSpec,unbinned,keck Linux passed
2705.3 Anaconda: jammy LTS Python (fast; pip CAMB) COBAYA_INSTALL_SKIP=polychord,planck_2015,CamSpec2021,2018_highl_CamSpec,unbinned,keck Linux passed
2705.4 Latest jammy Python 3.12 3.12 COBAYA_INSTALL_SKIP=polychord,planck_2015,CamSpec2021,2018_highl_CamSpec,unbinned,keck Linux passed

Build Configuration

Build Option Setting
Language Python
Operating System Linux (Xenial)
Build Configuration
{
  "language": "python",
  "os": [
    "linux"
  ],
  "dist": "xenial",
  "git": {
    "depth": false
  },
  "env": [
    "global={:COBAYA_INSTALL_SKIP=>\"polychord,planck_2015,CamSpec2021,2018_highl_CamSpec,unbinned,keck\"}"
  ],
  "if": "(type = pull_request) OR (branch = master) OR (branch =~ ^test.*) OR (branch =~ ^alltest.*) OR (tag IS present)",
  "cache": {
    "directories": [
      "/home/travis/build/CosmoPars/packages/code",
      "/home/travis/build/CosmoPars/packages/data/planck_supp_data_and_covmats",
      "/home/travis/build/CosmoPars/packages/data/planck_2018/baseline",
      "/home/travis/build/CosmoPars/packages/data/bicep_keck_2018",
      "/home/travis/build/CosmoPars/packages/data/bao_data",
      "/home/travis/build/CosmoPars/packages/data/sn_data",
      "/home/travis/build/CosmoPars/packages/data/des_data",
      "/home/travis/build/CosmoPars/packages/data/planck_2018_pliklite_native"
    ]
  },
  "jobs": {
    "include": [
      {
        "if": "branch !~ ^test.*",
        "dist": "focal",
        "name": "Minimum requisites for dependencies: gcc-7, Python 3.8",
        "addons": {
          "apt": {
            "packages": [
              "gcc-7",
              "g++-7",
              "gfortran-7"
            ]
          }
        },
        "env": [
          {
            "GCC_VERSION": "\"7\""
          }
        ],
        "python": "3.8"
      },
      {
        "if": "branch !~ ^test.*",
        "name": "Typical scenario: latest Ubuntu LTS",
        "dist": "jammy",
        "addons": {
          "apt": {
            "packages": [
              "gfortran"
            ]
          }
        },
        "install": [
          "pip install -r requirements.txt camb"
        ],
        "env": [
          {
            "GCC_VERSION": "\"ubuntu\""
          }
        ],
        "python": "3.10"
      },
      {
        "name": "Anaconda: jammy LTS Python (fast; pip CAMB)",
        "dist": "jammy",
        "env": [
          {
            "GCC_VERSION": "\"ubuntu\""
          },
          {
            "PYDIST": "\"ANACONDA\""
          },
          {
            "ANACONDA_CHANNEL": "\"defaults\""
          },
          {
            "COBAYA_INSTALL_SKIP": "\"$COBAYA_INSTALL_SKIP,classy\""
          }
        ],
        "language": "shell"
      },
      {
        "if": "branch !~ ^test.*",
        "name": "Latest jammy Python 3.12",
        "dist": "jammy",
        "addons": {
          "apt": {
            "packages": [
              "gfortran"
            ]
          }
        },
        "env": [
          {
            "GCC_VERSION": "\"ubuntu\""
          },
          {
            "COBAYA_INSTALL_SKIP": "\"$COBAYA_INSTALL_SKIP,classy\""
          }
        ],
        "python": "3.12"
      }
    ]
  },
  "before_install": [
    "if [[ \"$GCC_VERSION\" != \"ubuntu\" ]]; then mkdir -p gcc-symlinks; ln -s /usr/bin/gfortran-$GCC_VERSION gcc-symlinks/gfortran; ln -s /usr/bin/gcc-$GCC_VERSION gcc-symlinks/gcc; ln -s /usr/bin/g++-$GCC_VERSION gcc-symlinks/g++; export PATH=$PWD/gcc-symlinks:$PATH; fi",
    "which gfortran >/dev/null 2>&1 && gfortran --version || echo \"gfortran not installed\"",
    "if [[ \"$PYDIST\" == \"ANACONDA\" ]]; then wget -q https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; bash miniconda.sh -b -p $HOME/miniconda; export PATH=\"$HOME/miniconda/bin:$PATH\"; hash -r; conda config --set always_yes yes --set changeps1 no; conda info -a; conda create -q -n test-environment -c $ANACONDA_CHANNEL scipy matplotlib cython PyYAML dill coverage pytest pandas; source activate test-environment; conda install -c conda-forge mpi4py openmpi iminuit; pip install -r requirements.txt flake8 flaky pytest-xdist pytest-cov camb; else python -m pip install --upgrade pip setuptools wheel; pip install openmpi mpi4py -i https://pypi.anaconda.org/mpi4py/simple; pip install pytest-xdist pytest-cov flaky matplotlib dill coverage flake8 iminuit numba; fi",
    "python --version"
  ],
  "script": [
    "flake8 cobaya --select=E713,E704,E703,E714,E741,E10,E11,E20,E22,E23,E25,E27,E301,E302,E304,E9,F405,F406,F5,F6,F7,F8,W1,W2,W3,W6 --show-source --statistics",
    "export COBAYA_PACKAGES_PATH=\"../packages\"",
    "coverage run --parallel-mode -m cobaya.install polychord --debug",
    "coverage run --parallel-mode -m pytest tests/ -n auto -k \"not cosmo\" --skip-not-installed --no-flaky-report",
    "coverage run --parallel-mode -m cobaya.install cosmo-tests --no-progress-bars --debug --skip-global",
    "if [ -n \"${CAMB_BRANCH}\" ]; then rm -rf $COBAYA_PACKAGES_PATH/code/CAMB ; git clone --recursive --depth 1 -b $CAMB_BRANCH https://github.com/cmbant/CAMB $COBAYA_PACKAGES_PATH/code/CAMB ; python $COBAYA_PACKAGES_PATH/code/CAMB/setup.py build ; fi",
    "mpiexec -np 2 --mca orte_base_help_aggregate 0 --mca btl ^openib --oversubscribe coverage run --parallel-mode -m pytest -x -m mpi tests/ --no-flaky-report ;",
    "mkdir covers; mv .coverage.* covers; ls -ltra covers",
    "pytest tests/ --cov -vv -s -k \"cosmo\" -n 1 --skip-not-installed --no-flaky-report",
    "mv .coverage .coverage.pytest; mv covers/.cov* .",
    "git clone --depth=1 https://github.com/CobayaSampler/example_external_likelihood",
    "pip install ./example_external_likelihood --quiet",
    "coverage run --parallel-mode -m unittest test_package.tests.test"
  ],
  "after_success": [
    "bash <(curl -s https://codecov.io/bash)"
  ],
  "deploy": [
    {
      "provider": "pypi",
      "on": {
        "tags": true,
        "python": "3.10",
        "branch": [
          "master"
        ],
        "repo": "CobayaSampler/cobaya"
      },
      "edge": true,
      "username": "__token__",
      "password": {
        "secure": "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"
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  "notifications": {
    "email": [
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