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* General SCENIC questions s-aibar

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Discrimination of similar TF motifs in SCENIC

Dyrian525 asked Aug 29, 2022 in * General SCENIC questions · Unanswered

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Where can I find the Transciption Factor files?

julie-jch asked Aug 17, 2022 in * General SCENIC questions · Unanswered

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Interpreting Regulons of Transcriptional Repressors

ldunaway asked Aug 9, 2022 in * General SCENIC questions · Unanswered

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First release of SCENIC+

massonix asked Jul 27, 2022 in * General SCENIC questions · Unanswered

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Is SCENIC suitable for analyzing plant transcription factors?

RuYao1225 asked Jul 14, 2022 in * General SCENIC questions · Unanswered

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What is rankingsInDb?

brush111111111111 asked Jul 10, 2022 in [R] · Unanswered

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Selecting genes in expression matrix

HocheolJang426 asked Jul 4, 2022 in * General SCENIC questions · Unanswered

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Error with runSCENIC_2_createRegulons(scenicOptions, coexMethod=c("top5perTarget"))

GreyRockIQ asked Jun 14, 2022 in [R] · Unanswered

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AUCell Step ----->AttributeError: 'matrix' object has no attribute 'quantile'

wbrett87 asked May 20, 2022 in [Python] · Unanswered

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for inferred regulons, their transcription factors do not present in dataset?

Polligator asked May 19, 2022 in * General SCENIC questions · Unanswered

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Should I filter the single cell dataset before running the GRN step? Which Type of counts?

wariobrega asked May 17, 2022 in * General SCENIC questions · Unanswered

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Why the GRN Network is not complete?

wariobrega asked May 17, 2022 in * General SCENIC questions · Unanswered

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type of files in full pipeline run

GreyRockIQ asked May 15, 2022 in [Python] · Unanswered

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Regarding location of output folder

hd4git asked May 13, 2022 in [VSN] · Unanswered

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How can I get correlation values from pySCENIC?

newmanno asked May 12, 2022 in [Python] · Unanswered

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Finding TF activity for each cluster in TSNE

Lumskie asked Feb 14, 2022 in [R] · Unanswered

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Will pySCENIC be implemented with XGBoost library?

mimi3421 asked May 9, 2022 in [Python] · Unanswered

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How does AUCell work in this analysis?

nasjr08 asked May 6, 2022 in * General SCENIC questions · Unanswered

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error with runScenic_2

GreyRockIQ asked Apr 17, 2022 in [R] · Unanswered

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How to draw regulon activity heatmap from files in int folder?

HocheolJang426 asked Apr 27, 2022 in * General SCENIC questions · Unanswered

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PWMs for motifs in your tbl

daxus4 asked Apr 19, 2022 in * General SCENIC questions · Answered

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R crashes on SCENIC Initialization

NickNolan asked Apr 8, 2022 in [R] · Answered

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Info on pySCENIC for large datasets

laterz-f asked Apr 13, 2022 in [Python] · Unanswered

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Visualize and Finalize the Result

HocheolJang426 asked Apr 11, 2022 in [R] · Answered

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Sort and Finalize the result?

HocheolJang426 asked Apr 11, 2022 in [R] · Answered

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