Automate UTA yml stub #1
Workflow file for this run
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| name: UTA Update | ||
| on: | ||
| workflow_dispatch: | ||
| inputs: | ||
| genome-build: | ||
| description: Genome build | ||
| type: choice | ||
| options: | ||
| - GRCh37 | ||
| - GRCh38 | ||
| default: GRCh38 | ||
| run-fetch-data: | ||
| description: Fetch data with mirrors-ncbi | ||
| type: boolean | ||
| default: false | ||
| run-build-seqrepo: | ||
| description: Build SeqRepo | ||
| type: boolean | ||
| default: false | ||
| run-push-seqrepo: | ||
| description: Push SeqRepo to download area | ||
| type: boolean | ||
| default: false | ||
| run-prepare-loading: | ||
| description: Prepare files for loading | ||
| type: boolean | ||
| default: false | ||
| run-create-load-db: | ||
| description: Create loading database | ||
| type: boolean | ||
| default: false | ||
| run-load-data: | ||
| description: Load data | ||
| type: boolean | ||
| default: false | ||
| run-custom-transcripts: | ||
| description: Add custom transcript alignments | ||
| type: boolean | ||
| default: false | ||
| run-rename-db: | ||
| description: Rename database | ||
| type: boolean | ||
| default: false | ||
| run-create-update-ncbi-schema: | ||
| description: Create & update ncbi schema | ||
| type: boolean | ||
| default: false | ||
| run-dumb-new-db: | ||
| description: Dumb new database | ||
| type: boolean | ||
| default: false | ||
| run-deploy-db-for-testing: | ||
| description: Deploy new database for testing | ||
| type: boolean | ||
| default: false | ||
| run-test-build: | ||
| description: Test build | ||
| type: boolean | ||
| default: false | ||
| run-deploy-to-production: | ||
| description: Deploy to production | ||
| type: boolean | ||
| default: false | ||
| jobs: | ||
| summarize-inputs: | ||
| name: Workflow inputs | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Dump GHA inputs to summary page | ||
| uses: actions/github-script@v6 | ||
| env: | ||
| INPUTS_JSON: ${{ toJson(inputs) }} | ||
| with: | ||
| script: | | ||
| await core.summary | ||
| .addHeading('Inputs') | ||
| .addCodeBlock(JSON.stringify(JSON.parse(process.env.INPUTS_JSON), null, 2), 'json') | ||
| .write() | ||
