-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Gene deletion info, and submission tables and figures
- Loading branch information
1 parent
314a6b2
commit caa6bcc
Showing
20 changed files
with
1,006 additions
and
0 deletions.
There are no files selected for viewing
Large diffs are not rendered by default.
Oops, something went wrong.
Large diffs are not rendered by default.
Oops, something went wrong.
193 changes: 193 additions & 0 deletions
193
data/processed/modulome/gene_deletions_possible_del14_dels.csv
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,193 @@ | ||
locus_tag;BGC | ||
XNR_RS00110;1 | ||
XNR_RS00115;1 | ||
XNR_RS00120;1 | ||
XNR_RS31490;1 | ||
XNR_RS00125;1 | ||
XNR_RS00970;2 | ||
XNR_RS00975;2 | ||
XNR_RS00980;2 | ||
XNR_RS00985;2 | ||
XNR_RS00990;2 | ||
XNR_RS00995;2 | ||
XNR_RS01000;2 | ||
XNR_RS01005;2 | ||
XNR_RS01010;2 | ||
XNR_RS02820;5 | ||
XNR_RS02825;5 | ||
XNR_RS02830;5 | ||
XNR_RS02835;5 | ||
XNR_RS02840;5 | ||
XNR_RS02845;5 | ||
XNR_RS02850;5 | ||
XNR_RS02855;5 | ||
XNR_RS02860;5 | ||
XNR_RS02865;5 | ||
XNR_RS02870;5 | ||
XNR_RS02875;5 | ||
XNR_RS02880;5 | ||
XNR_RS02885;5 | ||
XNR_RS02890;5 | ||
XNR_RS02895;5 | ||
XNR_RS02900;5 | ||
XNR_RS02905;5 | ||
XNR_RS02910;5 | ||
XNR_RS02915;5 | ||
XNR_RS02920;5 | ||
XNR_RS02925;5 | ||
XNR_RS02935;5 | ||
XNR_RS02940;5 | ||
XNR_RS02945;5 | ||
XNR_RS02950;5 | ||
XNR_RS02955;5 | ||
XNR_RS02960;5 | ||
XNR_RS02965;5 | ||
XNR_RS02970;5 | ||
XNR_RS02975;5 | ||
XNR_RS02980;5 | ||
XNR_RS02990;5 | ||
XNR_RS02995;5 | ||
XNR_RS03000;5 | ||
XNR_RS03005;5 | ||
XNR_RS04865;7 | ||
XNR_RS04870;7 | ||
XNR_RS04875;7 | ||
XNR_RS04880;7 | ||
XNR_RS04885;7 | ||
XNR_RS04890;7 | ||
XNR_RS04895;7 | ||
XNR_RS04900;7 | ||
XNR_RS04905;7 | ||
XNR_RS04910;7 | ||
XNR_RS06430;9 | ||
XNR_RS10040;11 | ||
XNR_RS10045;11 | ||
XNR_RS10050;11 | ||
XNR_RS10055;11 | ||
XNR_RS10060;11 | ||
XNR_RS10065;11 | ||
XNR_RS10070;11 | ||
XNR_RS10075;11 | ||
XNR_RS10080;11 | ||
XNR_RS10085;11 | ||
XNR_RS10090;11 | ||
XNR_RS10095;11 | ||
XNR_RS10100;11 | ||
XNR_RS10105;11 | ||
XNR_RS10110;11 | ||
XNR_RS10815;12 | ||
XNR_RS10830;12 | ||
XNR_RS15555;14 | ||
XNR_RS15560;14 | ||
XNR_RS15565;14 | ||
XNR_RS15570;14 | ||
XNR_RS15575;14 | ||
XNR_RS15580;14 | ||
XNR_RS15585;14 | ||
XNR_RS15590;14 | ||
XNR_RS15595;14 | ||
XNR_RS15600;14 | ||
XNR_RS15605;14 | ||
XNR_RS15610;14 | ||
XNR_RS15615;14 | ||
XNR_RS15620;14 | ||
XNR_RS15625;14 | ||
XNR_RS15630;14 | ||
XNR_RS15635;14 | ||
XNR_RS15640;14 | ||
XNR_RS15645;14 | ||
XNR_RS17095;15 | ||
XNR_RS17100;15 | ||
XNR_RS17105;15 | ||
XNR_RS17110;15 | ||
XNR_RS17115;15 | ||
XNR_RS19550;16 | ||
XNR_RS19555;16 | ||
XNR_RS19560;16 | ||
XNR_RS19565;16 | ||
XNR_RS19570;16 | ||
XNR_RS19575;16 | ||
XNR_RS27930;19 | ||
XNR_RS27935;19 | ||
XNR_RS27940;19 | ||
XNR_RS27945;19 | ||
XNR_RS27950;19 | ||
XNR_RS27955;19 | ||
XNR_RS28185;20 | ||
XNR_RS28190;20 | ||
XNR_RS28195;20 | ||
XNR_RS28200;20 | ||
XNR_RS28205;20 | ||
XNR_RS28215;20 | ||
XNR_RS28225;20 | ||
XNR_RS28230;20 | ||
XNR_RS28775;22 | ||
XNR_RS28780;22 | ||
XNR_RS28785;22 | ||
XNR_RS28790;22 | ||
XNR_RS28975;23 | ||
XNR_RS28980;23 | ||
XNR_RS28985;23 | ||
XNR_RS28990;23 | ||
XNR_RS28995;23 | ||
XNR_RS29000;23 | ||
XNR_RS29005;23 | ||
XNR_RS29010;23 | ||
XNR_RS29015;23 | ||
XNR_RS29020;23 | ||
XNR_RS29025;23 | ||
XNR_RS29030;23 | ||
XNR_RS31435; | ||
XNR_RS29040;23 | ||
XNR_RS29045;23 | ||
XNR_RS29050;23 | ||
XNR_RS29055;23 | ||
XNR_RS29060;23 | ||
XNR_RS29065;23 | ||
XNR_RS29070;23 | ||
XNR_RS29075;23 | ||
XNR_RS29080;23 | ||
XNR_RS29085;23 | ||
XNR_RS31670; | ||
XNR_RS29095;23 | ||
XNR_RS29100;23 | ||
XNR_RS29105;23 | ||
XNR_RS29110;23 | ||
XNR_RS29115;23 | ||
XNR_RS29120;23 | ||
XNR_RS29125;23 | ||
XNR_RS29130;23 | ||
XNR_RS29135;23 | ||
XNR_RS29140;23 | ||
XNR_RS30540; | ||
XNR_RS30545; | ||
XNR_RS29155;23 | ||
XNR_RS29160;23 | ||
XNR_RS29165;23 | ||
XNR_RS29170;23 | ||
XNR_RS29175;23 | ||
XNR_RS29185;23 | ||
XNR_RS29190;23 | ||
XNR_RS29195;23 | ||
XNR_RS29200;23 | ||
XNR_RS29205;23 | ||
XNR_RS29210;23 | ||
XNR_RS29215;23 | ||
XNR_RS29220;23 | ||
XNR_RS29225;23 | ||
XNR_RS29230;23 | ||
XNR_RS29235;23 | ||
XNR_RS29240;23 | ||
XNR_RS29245;23 | ||
XNR_RS29250;23 | ||
XNR_RS29255;23 | ||
XNR_RS29260;23 | ||
XNR_RS30980; | ||
XNR_RS29315;23 | ||
XNR_RS29320;23 | ||
XNR_RS30550; | ||
XNR_RS29330;23 | ||
XNR_RS31675; | ||
XNR_RS30185; | ||
XNR_RS30190; | ||
XNR_RS30670; |
Large diffs are not rendered by default.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,8 @@ | ||
BGC;Deletion;Status;%_reduced;strain_after_deletion;from;to | ||
19-23;1;Deleted;6.65 (455 kb);J1074_CfBΔ5;XNR_RS27780;XNR_RS31675 | ||
13;2;Deleted;0.04 (2.7 kb);J1074_CfBΔ6;XNR_RS11580;XNR_RS11585 | ||
15;3;Deleted; 0.63 (42.8 kb);J1074_CfBΔ7;XNR_RS17095;XNR_RS17110 | ||
5;4;Deleted;0.33 (22.3 kb);J1074_CfBΔ8;XNR_RS02850;XNR_RS02945 | ||
2;5;Deleted;0.41 (28 kb);J1074_CfBΔ9;XNR_RS00955;XNR_RS01020 | ||
1;6;Deleted;0.48 (32.8 kb);J1074_CfBΔ10;XNR_RS31485;XNR_RS31495 | ||
7;7;Deleted;0.64 (44.1 kb);J1074_CfBΔ11;XNR_RS04825;XNR_RS04920 |
Oops, something went wrong.