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    38 repositories

    • FungAMR

      Public
      Repository containing data analysis scripts and figures for the FungAMR paper.
      Jupyter Notebook
      •0•1•0•0•Updated Dec 17, 2024Dec 17, 2024

    • Dibyachintan_et_al_2024

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • Jordan_et_al_2024

      Public
      All code used in Jordan et al 2024
      Python
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • Bautista2024_LOH_project_NatureCommunications

      Public
      R
      •1•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • Bautista2024_LOH_project_Review2

      Public
      R
      •1•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • Bedard_et_al_2024

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • Durand_et_al_2024

      Public
      Dedicated repository for the analysis of Fks DMS data
      Jupyter Notebook
      •0•0•0•0•Updated Jul 21, 2024Jul 21, 2024

    • Bautista2023_LOH_project

      Public
      R
      •1•0•0•0•Updated Jul 3, 2024Jul 3, 2024

    • Despres_et_al_2024

      Public
      Notebooks using for data analysis and figure generation of Despres et al 2024
      Jupyter Notebook
      •0•0•0•0•Updated Jun 10, 2024Jun 10, 2024

    • Rouleau_et_al_2024

      Public
      Scripts for Rouleau et al 2023
      Python
      •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

    • Homomer_duplication_2024

      Public
      Scripts and data for Cisneros et al., (2024). Mutational biases promote neutral increases in the complexity of protein interaction networks following gene duplication.
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 12, 2024Mar 12, 2024

    • Bradley_2023_CK2

      Public
      Scripts and data for the CK2 substrate quality manuscript
      Python
      •0•0•0•0•Updated Feb 27, 2024Feb 27, 2024

    • Durand_et_al_2023

      Public
      Scripts for data analyses and generation of figures from Durand et al (2023)
      Jupyter Notebook
      •0•0•0•0•Updated Feb 22, 2024Feb 22, 2024

    • Bradley_2023_spurious_pY

      Public
      Scripts and data for the project on spurious phosphorylation
      0•0•0•0•Updated Jan 12, 2024Jan 12, 2024

    • Lemieux_et_al2023

      Public
      Scripts to analyse data and generate figures for Lemieux et al. 2023
      R
      •0•0•0•0•Updated Nov 17, 2023Nov 17, 2023

    • Evans-Yamamoto_et_al_2023

      Public
      The computer codes and control files, defining the settings for the codeml program execution, used in the publication Parallel nonfunctionalization of CK1δ/ε kinase ohnologs following a whole-genome duplication event.
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Nov 9, 2023Nov 9, 2023

    • Evans-Yamamoto_et_al_2021

      Public
      Jupyter notebooks for BFG-PCA related simulation and analysis.
      synthetic-biologysystems-biologyprotein-protein-interactiondna-sequencingdna-barcodebarcode-fusion-genetics
      Python
      •
      Other
      •0•2•0•0•Updated Sep 25, 2023Sep 25, 2023

    • lrma

      Public
      Scripts and data for the analysis of transposable elements in hybrid yeast mutation accumulation lines with long reads
      Jupyter Notebook
      •1•0•0•0•Updated Sep 13, 2023Sep 13, 2023

    • Aube_et_al_2022

      Public
      Scripts for analyses, simulations and figure generation from Aube et al. (2022).
      Jupyter Notebook
      •0•0•0•0•Updated Apr 17, 2023Apr 17, 2023

    • mito_ma

      Public
      Scripts for analyses of the project on mtDNA evolution in yeast hybrid MA lines
      Jupyter Notebook
      •1•0•0•0•Updated Oct 26, 2022Oct 26, 2022

    • DfrB1_DMS_2022

      Public
      Epistasis between promoter activity and coding mutations shapes gene evolvability by Cisneros, Gagnon-Arsenault, et al., (2022)
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 25, 2022Oct 25, 2022

    • DionneEtal2020

      Public
      Scripts related to the article Dionne_et_al_2020
      R
      •1•0•0•0•Updated Aug 9, 2022Aug 9, 2022

    • Despres_et_al_2021

      Public
      Script for data analysis and figure generation of Despres et al 2021
      Jupyter Notebook
      •1•0•0•0•Updated May 4, 2022May 4, 2022

    • Drouin_et_al_2021

      Public
      Scripts for the analyses presented in Drouin et al. 2021 "Testing the genomic shock hypothesis using transposable element expression in yeast hybrids"
      Jupyter Notebook
      •1•0•0•0•Updated Aug 5, 2021Aug 5, 2021

    • Marsit_et_al_2021

      Public
      Scripts for “The rate of whole-genome duplication can be accelerated by hybridization” by Souhir Marsit, Mathieu Hénault, Guillaume Charron, Anna Fijarczyk, and Christian R Landry. All analyses were run using the master script “Script_All_data_Marsit_2020.R” in the Scripts folder
      R
      •0•0•0•0•Updated Mar 24, 2021Mar 24, 2021

    • AscencioETAL_2020

      Public
      R
      •0•0•0•0•Updated Jan 14, 2021Jan 14, 2021

    • Dandage_and_Berger_et_al_2020

      Public
      Source code for "Frequent assembly of chimeric complexes in the protein interaction network of an interspecies hybrid"
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 23, 2020Nov 23, 2020

    • Dandage_and_Landry_2019

      Public
      Source code for "Paralog dependency indirectly affects the robustness of human cells." - Rohan Dandage and Christian R Landry
      Jupyter Notebook
      •0•0•0•0•Updated Nov 23, 2020Nov 23, 2020

    • Hybridization_and_stress

      Public
      R
      •1•0•0•0•Updated Nov 3, 2020Nov 3, 2020

    • Fijarczyk2020_JeanTalon

      Public
      Custom code for the paper about the Jean-Talon beer strain
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated May 20, 2020May 20, 2020